CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY46075
CDY63966

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17020.1	CDY46075	AT2G23430.1	16766674
AT5G17020.1	CDY63966	AT2G23430.1	16766674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69253	Canola	cytosol, plasma membrane	69.97	97.34
CDX78722	Canola	cytosol	99.33	82.91
CDX70730	Canola	cytosol	98.2	81.97
VIT_06s0009g01690.t01	Wine grape	cytosol	4.95	81.48
CDY02737	Canola	cytosol	95.61	79.0
CDX69407	Canola	cytosol	94.6	78.97
CDX85477	Canola	cytosol	95.39	78.81
CDY16965	Canola	cytosol	94.38	77.97
AT5G17020.1	Thale cress	cytosol	93.7	77.49
VIT_16s0039g02220.t01	Wine grape	cytosol	86.95	71.84
KRH29017	Soybean	cytosol, nucleus	85.04	70.19
KRH24046	Soybean	cytosol, nucleus	85.04	70.19
Solyc03g096920.2.1	Tomato	cytosol, nucleus, plastid	84.36	69.77
KRH27740	Soybean	cytosol	83.8	69.56
GSMUA_Achr8P33200_001	Banana	cytosol	83.91	69.4
KRH77701	Soybean	cytosol	83.01	68.91
TraesCS5D01G568300.3	Wheat	cytosol	80.76	68.51
Os03t0858100-01	Rice	cytosol, plasma membrane	81.55	67.76
GSMUA_Achr1P25620_001	Banana	cytosol	84.25	67.66
TraesCS5B01G561500.1	Wheat	cytosol, golgi, unclear	80.54	67.42
CDY23464	Canola	cytosol	81.1	67.32
TraesCS4A01G317800.1	Wheat	cytosol, golgi	80.65	67.07
EER90476	Sorghum	cytosol	80.76	67.04
CDY49924	Canola	cytosol	81.78	66.15
HORVU5Hr1G124770.13	Barley	cytosol	80.43	65.12
EER98405	Sorghum	cytosol	77.73	64.76
Zm00001d034914_P037	Maize	cytosol	79.86	63.28
VIT_14s0006g01850.t01	Wine grape	cytosol	13.84	62.76
Zm00001d012815_P022	Maize	cytosol	76.83	59.34
CDY49926	Canola	nucleus	5.06	57.69
CDY28738	Canola	cytosol	67.83	57.32
CDY43150	Canola	cytosol	66.48	56.99
CDY49925	Canola	cytosol, peroxisome, plastid	1.57	43.75
VIT_06s0009g01700.t01	Wine grape	extracellular, peroxisome, plastid	1.8	36.36

Protein Annotations

EnsemblPlants:CDX70734	EnsemblPlantsGene:GSBRNA2T00140602001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:CRM1_C_dom	InterPro:Exportin-1/Importin-b-like	InterPro:IPR011989	PANTHER:PTHR11223	PANTHER:PTHR11223:SF2
PFAM:PF08389	PFAM:PF08767	ProteinID:CDX70734	ProteinID:CDX70734.1	SEG:seg	SMART:SM01102
SUPFAM:SSF48371	UniParc:UPI0004EED6A5	MapMan:23.5.1.2.8	:	:	:

Description

BnaC03g08180D

Coordinates

chrLK031791:+:1767820..1774040

Molecular Weight (calculated)

102346.0 Da

IEP (calculated)

5.397

GRAVY (calculated)

-0.100

Length

889 amino acids

Sequence
(BLAST)

001: MTQQKIKELK QSLNSEFKLI HDLCLYGLSA SQRQDLIRST LSALHAYLSW IPLGYIFESP LLETLLKFFH VPAYRNLTLQ CLTEVAALNF GDFYNVQYVK
101: MYTIFIGQLQ TILPPSTNIP EAYSSGSDEE QAFIQNLALF FTSFFKFHIR VLESAPDTVS LLLTGLEYLI NISYVDDTEV FKVCLDYWNT LVLELFDAHH
201: NSDNPAASIN LMGLQMPQVL QRRQLYSNPM SKLRGLMINR MAKPEEVLIV EDENGNIVRE TMKDNDVLVQ YKIMRETLIY LSHLDHDDTE KQMLRKLTKQ
301: LSGEEWAWNT LNTLCWAIGS ISGSMAEDQE NRFLVMVIRD LLNLCEITKG KDNKAVIASN IMYVVGQYPR FLRAHWKFLK TVVNKLFEFM HETHPGVQDM
401: ACDTFLKIVQ KCKRKFVIVQ VGEREPFVSE LLSGLASTVQ DLEPHQIHSF YESVGNMIHA ESDPLKRDEY LRRLMELPNE KWAEIIGQAR HSVEVLKDPV
501: VIRTVLNILQ TNTSAATSLG TDFLSQISLI FLDMLNVYRM YSELVSTSIT DGGPYASKTS FVKLLRSVKR ETLKLIETFL DKAEDQPHIG KQFVSPMMEY
601: VLADYARNVP DARESEVLSL FATIINKYKA TMLDDVPNIF EAVFQCTLEM ITKNFEDYPE HRLKFFSLLR AIATFCFPAL IKLSSQQLKL VMDSIIWAFR
701: HTERNIAETG LNLLLEMLKN FQQSAFCNQF FRSYFIQIEQ EIFAVLTDTF HKPGFKLHVL VLQHLFCLVE SGALTEPLWD TATVPYPYPN NAAFVREYTI
801: KLLSSSFPNM TAAEVTQFVN GLYESRNDPS EFKKNIRDFL VQSKEFSAQD NKDLYAEEAA AQREQERQRM LSIPGLVAPN EIQDEMVDS

Best Arabidopsis Sequence Match ( AT3G03110.1 )
(BLAST)

0001: MAAEKLRDLS QPIDVVLLDA TVEAFYSTGS KEERASADNI LRDLKANPDT WLQVVHILQN TSSTHTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISDV
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS

Arabidopsis Description

XPO1BProtein EXPORTIN 1B [Source:UniProtKB/Swiss-Prot;Acc:F4IZR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.