Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17020.1 | CDY46075 | AT2G23430.1 | 16766674 |
| AT5G17020.1 | CDY63966 | AT2G23430.1 | 16766674 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0009g01690.t01 | Wine grape | cytosol | 6.89 | 81.48 |
| CDX70734 | Canola | cytosol | 97.34 | 69.97 |
| VIT_14s0006g01850.t01 | Wine grape | cytosol | 19.25 | 62.76 |
| CDX78722 | Canola | cytosol | 97.03 | 58.22 |
| CDX70730 | Canola | cytosol | 96.24 | 57.75 |
| CDX69407 | Canola | cytosol | 92.64 | 55.59 |
| CDY02737 | Canola | cytosol | 93.43 | 55.48 |
| CDX85477 | Canola | cytosol | 92.96 | 55.2 |
| CDY16965 | Canola | cytosol | 92.49 | 54.93 |
| AT5G17020.1 | Thale cress | cytosol | 91.71 | 54.51 |
| VIT_16s0039g02220.t01 | Wine grape | cytosol | 85.76 | 50.93 |
| KRH29017 | Soybean | cytosol, nucleus | 84.35 | 50.05 |
| KRH24046 | Soybean | cytosol, nucleus | 84.19 | 49.95 |
| Solyc03g096920.2.1 | Tomato | cytosol, nucleus, plastid | 83.57 | 49.67 |
| GSMUA_Achr8P33200_001 | Banana | cytosol | 83.41 | 49.58 |
| KRH27740 | Soybean | cytosol | 82.63 | 49.3 |
| TraesCS5D01G568300.3 | Wheat | cytosol | 80.59 | 49.14 |
| KRH77701 | Soybean | cytosol | 81.69 | 48.74 |
| Os03t0858100-01 | Rice | cytosol, plasma membrane | 81.53 | 48.69 |
| CDY23464 | Canola | cytosol | 81.06 | 48.37 |
| GSMUA_Achr1P25620_001 | Banana | cytosol | 83.72 | 48.33 |
| TraesCS5B01G561500.1 | Wheat | cytosol, golgi, unclear | 80.28 | 48.31 |
| EER90476 | Sorghum | cytosol | 80.75 | 48.18 |
| TraesCS4A01G317800.1 | Wheat | cytosol, golgi | 80.59 | 48.18 |
| CDY49924 | Canola | cytosol | 81.06 | 47.13 |
| HORVU5Hr1G124770.13 | Barley | cytosol | 80.28 | 46.72 |
| EER98405 | Sorghum | cytosol | 77.62 | 46.49 |
| Zm00001d034914_P037 | Maize | cytosol | 80.13 | 45.63 |
| Zm00001d012815_P022 | Maize | cytosol | 79.97 | 44.4 |
| CDY43150 | Canola | cytosol | 67.61 | 41.66 |
| CDY28738 | Canola | cytosol | 67.61 | 41.06 |
| VIT_06s0009g01700.t01 | Wine grape | extracellular, peroxisome, plastid | 2.35 | 34.09 |
| CDY49925 | Canola | cytosol, peroxisome, plastid | 0.47 | 9.38 |
| CDY49926 | Canola | nucleus | 0.16 | 1.28 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.8 | GO:A0A078JNY1 | UniProt:A0A078JNY1 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDY69253 | ProteinID:CDY69253 | ProteinID:CDY69253.1 | InterPro:CRM1_C_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00084278001 | InterPro:IPR011989 | PFAM:PF08767 |
| PANTHER:PTHR11223 | PANTHER:PTHR11223:SF2 | SMART:SM01102 | SUPFAM:SSF48371 | TMHMM:TMhelix | UniParc:UPI0004EF498E |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng62660DBnaCnng62660D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JNY1]
Coordinates
chrLK038959:-:2..4214
Molecular Weight (calculated)
73686.0 Da
IEP (calculated)
6.211
GRAVY (calculated)
0.009
Length
639 amino acids
Sequence
(BLAST)
(BLAST)
001: MQFHIRVLES APDTVALLLA GLEYLINISY VDDTEVFKVC LDYWNTLVLE LFDAHHNSDN PAASINLMGL QMPQVLQRRQ LYSNPMSKLR GLMINRMAKP
101: EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLTKQLSGE EWAWNTLNTL CWAIGSISGS MAEDQENRFL VMVIRDLLNL
201: CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR KFVIVQVGER EPFVSELLSG LASTVQDLEP
301: HQIHSFYESV GNMIHAESDP LKRDEYLRRL MELPNEKWAE IIGQARHSVE VLKDPVVIRT VLNILQTNTS AATSLGTDFL SQISLIFLDM LNVYRMYSEL
401: VSASITDGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV SPMMEYVLAD YARNVPDARE SEVLSLFATI INKYKATMLD DVPNIFEAVF
501: QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SQQLKLVMDS IIWAFRHTER NIAETGLNLL LEMLKNFQQS AFCNQFFRSY FIQIEQEIFA
601: VLTDTFHKPG FKLHVLVLQH LFCLVIPSLL SHLILLLPL
101: EEVLIVEDEN GNIVRETMKD NDVLVQYKIM RETLIYLSHL DHDDTEKQML RKLTKQLSGE EWAWNTLNTL CWAIGSISGS MAEDQENRFL VMVIRDLLNL
201: CEITKGKDNK AVIASNIMYV VGQYPRFLRA HWKFLKTVVN KLFEFMHETH PGVQDMACDT FLKIVQKCKR KFVIVQVGER EPFVSELLSG LASTVQDLEP
301: HQIHSFYESV GNMIHAESDP LKRDEYLRRL MELPNEKWAE IIGQARHSVE VLKDPVVIRT VLNILQTNTS AATSLGTDFL SQISLIFLDM LNVYRMYSEL
401: VSASITDGGP YASKTSFVKL LRSVKRETLK LIETFLDKAE DQPHIGKQFV SPMMEYVLAD YARNVPDARE SEVLSLFATI INKYKATMLD DVPNIFEAVF
501: QCTLEMITKN FEDYPEHRLK FFSLLRAIAT FCFPALIKLS SQQLKLVMDS IIWAFRHTER NIAETGLNLL LEMLKNFQQS AFCNQFFRSY FIQIEQEIFA
601: VLTDTFHKPG FKLHVLVLQH LFCLVIPSLL SHLILLLPL
0001: MAAEKLRDLS QPIDVVLLDA TVEAFYSTGS KEERASADNI LRDLKANPDT WLQVVHILQN TSSTHTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISDV
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS
Arabidopsis Description
XPO1BProtein EXPORTIN 1B [Source:UniProtKB/Swiss-Prot;Acc:F4IZR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.