Factsheet for Bra021317.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32382	Canola	nucleus	90.58	98.94
Bra031402.1-P	Field mustard	nucleus	62.01	57.53
Bra027078.1-P	Field mustard	nucleus	62.66	50.79
AT1G61730.1	Thale cress	nucleus	48.05	39.36
Bra034488.1-P	Field mustard	nucleus	34.74	33.23
Bra019847.1-P	Field mustard	nucleus	37.66	32.58
Bra032717.1-P	Field mustard	nucleus	34.42	31.93
AT4G00390.1	Thale cress	nucleus	37.34	31.59
Bra025445.1-P	Field mustard	nucleus	30.19	30.29
Os09t0451700-00	Rice	nucleus	14.29	24.44
Bra013873.1-P	Field mustard	nucleus	26.62	22.91
Bra019183.1-P	Field mustard	nucleus	26.95	22.68
Bra038583.1-P	Field mustard	nucleus	25.65	18.85
KRH10688	Soybean	nucleus	25.32	17.85
KRH21647	Soybean	nucleus	24.68	16.96
PGSC0003DMT400079215	Potato	nucleus	21.75	16.79
KRH57853	Soybean	nucleus	19.81	15.76
Bra040416.1-P	Field mustard	nucleus	19.81	14.35
GSMUA_AchrUn_...	Banana	nucleus	19.16	14.32
KXG25358	Sorghum	nucleus, plastid	18.51	13.1
Zm00001d049991_P001	Maize	nucleus, plastid	18.83	12.72
EER96833	Sorghum	nucleus	18.18	12.67
Bra009986.1-P	Field mustard	nucleus	16.88	12.56
Zm00001d005865_P001	Maize	nucleus	17.53	12.33
TraesCS5A01G234500.1	Wheat	nucleus	19.48	12.24
TraesCS5D01G241400.1	Wheat	nucleus	19.16	12.04
Zm00001d020688_P001	Maize	nucleus	16.56	11.92
TraesCS5B01G233000.1	Wheat	nucleus	18.83	11.86
Bra040116.1-P	Field mustard	nucleus	14.29	11.86
HORVU5Hr1G067630.1	Barley	nucleus	18.83	11.84
Os08t0467600-00	Rice	nucleus	19.48	11.28
Bra036116.1-P	Field mustard	nucleus	10.06	8.66
VIT_00s0999g00010.t01	Wine grape	cytosol, nucleus	5.84	2.98

Protein Annotations

EnsemblPlants:Bra021317.1	EnsemblPlants:Bra021317.1-P	EnsemblPlantsGene:Bra021317	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	PANTHER:PTHR31662	PANTHER:PTHR31662:SF1
PFAM:PF04504	SEG:seg	UniParc:UPI000254505A	UniProt:M4DXS1	MapMan:15.5.28	:

Description

AT4G00390 (E=1e-052) | transcription regulator

Coordinates

chrA01:-:22344927..22345853

Molecular Weight (calculated)

34589.5 Da

IEP (calculated)

9.444

GRAVY (calculated)

-1.001

Length

308 amino acids

Sequence
(BLAST)

001: MTKKRDPLEN PPAASSSDDA SSSEEEELPV KAPSSSAAQQ ASDIDSGSET ETDSDTEQPP NQRSGKAIVA SKKDKSGTKR PSEGTSRDTN SKRAKKIGED
101: SKKPAFQRLW TEEDEIAVLQ GMIDFKNDTG NSPYDDTNAY YDYIKNSISF EVSKNQFMDK LRSLKKKYMG KEKPSFTKPH DHKSYRLCNY IWGPDGMGLD
201: TAVKSNGVSK KKTKKLADDD GKRVLVRADE KSDWFGNSFL VRGIAAFGVD EHYVKQRWSL VPVETKKRVE EKVKMLRAKE IEFLLQKAKI LHEVTSMIAE
301: ASKNKPFE

Best Arabidopsis Sequence Match ( AT1G61730.1 )
(BLAST)

001: MTKKLNPLED PPTATSSDED DVETSEAGEA SDDSSSSEED VPIKIRIKSP SATTAAAPPA KSTAVSTAAD SDSGSETETD SDSESTNPPN SGSGKTIALN
101: TVNLKKKEDP TSSSATLALP AMKSGTKRPA SEAAATTSTK RVKKDEESVK KPGGFQRLWS EEDEILVLQG MIDFKADTGK SPYVDTNAFY DFLKKSISFE
201: VSKNQFMDKI RSLRKKYIGK EGRNEPSFVK AHDKKAFELS KFIWGPKGIA LDSNVKSNGV SKKSVAKKKI DSVKQELVFA GGSSTNGKKV EEDGGDDGCD
301: WFDNSSLVRM IASLGVDEYY VKQQWSLVSV ESKKIVEEKY KLLQAKELEF VLEKTKFLNE VASMFVEASK NKPLDT

Arabidopsis Description

Probable transcription factor At1g61730 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.