Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G241400.1 | Wheat | nucleus | 90.39 | 90.2 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 82.62 | 82.45 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 75.87 | 75.71 |
| Os09t0451700-00 | Rice | nucleus | 16.97 | 46.11 |
| EER96833 | Sorghum | nucleus | 40.9 | 45.25 |
| Zm00001d020688_P001 | Maize | nucleus | 37.01 | 42.29 |
| Zm00001d005865_P001 | Maize | nucleus | 37.42 | 41.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.06 | 25.0 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 15.95 | 20.74 |
| CDY12911 | Canola | nucleus | 7.98 | 20.21 |
| KRH57853 | Soybean | nucleus | 15.75 | 19.9 |
| CDY32382 | Canola | nucleus | 11.45 | 19.86 |
| PGSC0003DMT400079215 | Potato | nucleus | 16.16 | 19.8 |
| CDY01140 | Canola | nucleus | 10.84 | 19.2 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 13.5 | 19.02 |
| Bra021317.1-P | Field mustard | nucleus | 11.86 | 18.83 |
| CDY68087 | Canola | nucleus | 11.86 | 18.83 |
| CDY18747 | Canola | nucleus | 13.7 | 18.77 |
| CDX94469 | Canola | nucleus | 5.11 | 18.52 |
| Bra031402.1-P | Field mustard | nucleus | 12.47 | 18.37 |
| AT1G61730.1 | Thale cress | nucleus | 14.11 | 18.35 |
| CDY49787 | Canola | nucleus | 13.91 | 18.33 |
| Bra027078.1-P | Field mustard | nucleus | 14.11 | 18.16 |
| Bra034488.1-P | Field mustard | nucleus | 11.86 | 18.01 |
| KRH21647 | Soybean | nucleus | 16.36 | 17.86 |
| Bra032717.1-P | Field mustard | nucleus | 12.07 | 17.77 |
| CDX97966 | Canola | nucleus | 11.86 | 17.68 |
| KRH10688 | Soybean | nucleus | 15.75 | 17.62 |
| AT4G00390.1 | Thale cress | nucleus | 13.09 | 17.58 |
| CDX99698 | Canola | nucleus | 10.84 | 17.21 |
| VIT_00s0868g00010.t01 | Wine grape | nucleus | 15.34 | 17.16 |
| Bra019847.1-P | Field mustard | nucleus | 12.47 | 17.13 |
| AT4G00250.1 | Thale cress | nucleus | 11.04 | 16.93 |
| CDY07275 | Canola | nucleus | 12.27 | 16.76 |
| CDY61958 | Canola | nucleus | 12.27 | 16.53 |
| AT4G00130.1 | Thale cress | mitochondrion | 6.54 | 16.49 |
| AT1G44810.1 | Thale cress | nucleus | 9.82 | 16.22 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 12.47 | 16.18 |
| VIT_12s0059g02690.t01 | Wine grape | nucleus | 14.31 | 16.05 |
| Bra025445.1-P | Field mustard | nucleus | 9.82 | 15.64 |
| CDX89436 | Canola | nucleus | 11.25 | 15.62 |
| AT1G66420.1 | Thale cress | nucleus | 9.0 | 15.6 |
| AT4G00610.1 | Thale cress | plastid | 10.43 | 15.55 |
| AT4G25210.1 | Thale cress | nucleus | 11.66 | 15.49 |
| CDY52323 | Canola | nucleus | 5.32 | 15.38 |
| Bra013873.1-P | Field mustard | nucleus | 11.25 | 15.36 |
| CDY27657 | Canola | nucleus | 9.41 | 15.13 |
| AT1G11510.1 | Thale cress | nucleus | 10.84 | 15.06 |
| CDX92682 | Canola | nucleus | 11.04 | 14.59 |
| CDY26346 | Canola | nucleus | 12.07 | 14.32 |
| AT2G01370.1 | Thale cress | mitochondrion | 7.36 | 14.29 |
| Bra038583.1-P | Field mustard | nucleus | 12.07 | 14.08 |
| CDY11061 | Canola | nucleus | 10.43 | 13.97 |
| Bra019183.1-P | Field mustard | nucleus | 10.43 | 13.93 |
| AT4G01260.1 | Thale cress | nucleus | 9.0 | 13.54 |
| AT4G00238.1 | Thale cress | nucleus | 9.41 | 13.33 |
| AT1G55950.1 | Thale cress | mitochondrion | 5.32 | 11.87 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 3.27 | 2.65 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G233000.1 | EnsemblPlantsGene:TraesCS5B01G233000 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF15 |
| PFAM:PF04504 | SEG:seg | MapMan:15.5.28 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:411020836..411022305
Molecular Weight (calculated)
52074.0 Da
IEP (calculated)
9.660
GRAVY (calculated)
-0.955
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKRSAATA WGSPSDASDA EGDAGHRHRD RDDPPSDTDP SKTPPPNPNP KSSAAAPSST PSVAADSAAA GSDSGGTYDS DAEAHRRPAP KPAASSPKPG
101: GKPRARSPGI NSDSYNSEDS DAEADRRLAP KAAASSPKPG GKPRARSPGI NSDSEDSAAP AASDADLDPA AGADSEDDNV SPLRSARRPR AEASIIKPIS
201: SRPMDSPPRG SASASEPRVK RPRSAAISAP SPDPLKRPSR LWSHGDELLI LRGLATYRAK SGVLPGSTND IGKLHSHIRA QLSVRVSTTQ LSDKVRRLKQ
301: KYQLLATRAK NGREQELHTP HDRSIYEHAK KVWGLVGSGG GDGGGSGYEN YGGGDSDELQ YSGDSDDDME SQRDDRYHIK NRKVRPITAA NGNGIGLGAV
401: NANGRGKSGL EKGKDAYPYL WETVEELSKE HPSGAAFKKA FEVLEGSKVR AIEEKLRRFR LMEIRQQLRR MDLMKETVRM VLDALESAD
101: GKPRARSPGI NSDSYNSEDS DAEADRRLAP KAAASSPKPG GKPRARSPGI NSDSEDSAAP AASDADLDPA AGADSEDDNV SPLRSARRPR AEASIIKPIS
201: SRPMDSPPRG SASASEPRVK RPRSAAISAP SPDPLKRPSR LWSHGDELLI LRGLATYRAK SGVLPGSTND IGKLHSHIRA QLSVRVSTTQ LSDKVRRLKQ
301: KYQLLATRAK NGREQELHTP HDRSIYEHAK KVWGLVGSGG GDGGGSGYEN YGGGDSDELQ YSGDSDDDME SQRDDRYHIK NRKVRPITAA NGNGIGLGAV
401: NANGRGKSGL EKGKDAYPYL WETVEELSKE HPSGAAFKKA FEVLEGSKVR AIEEKLRRFR LMEIRQQLRR MDLMKETVRM VLDALESAD
001: MTKKLDPPTA PSSDEDDVET SEDDSSSSEE DEPIKSLPAT TAAAPAKSTA VSAATPAKST SVSAAAPSKS TAVSAAADSD SGSESETDSD SESTDPPKSG
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN
Arabidopsis Description
Probable transcription factor At4g00390 [Source:UniProtKB/Swiss-Prot;Acc:O23063]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.