Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G234500.1 | Wheat | nucleus | 90.41 | 90.41 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 90.2 | 90.39 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 79.18 | 79.18 |
| Os09t0451700-00 | Rice | nucleus | 17.35 | 47.22 |
| EER96833 | Sorghum | nucleus | 40.82 | 45.25 |
| Zm00001d020688_P001 | Maize | nucleus | 37.14 | 42.52 |
| Zm00001d005865_P001 | Maize | nucleus | 37.35 | 41.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.43 | 25.49 |
| KRH57853 | Soybean | nucleus | 16.53 | 20.93 |
| CDY32382 | Canola | nucleus | 11.63 | 20.21 |
| CDY12911 | Canola | nucleus | 7.96 | 20.21 |
| PGSC0003DMT400079215 | Potato | nucleus | 15.92 | 19.55 |
| Bra021317.1-P | Field mustard | nucleus | 12.04 | 19.16 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 15.31 | 18.84 |
| CDY49787 | Canola | nucleus | 14.08 | 18.6 |
| CDY01140 | Canola | nucleus | 10.41 | 18.48 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 13.06 | 18.44 |
| Bra034488.1-P | Field mustard | nucleus | 12.04 | 18.32 |
| CDY18747 | Canola | nucleus | 13.27 | 18.21 |
| Bra027078.1-P | Field mustard | nucleus | 14.08 | 18.16 |
| AT1G61730.1 | Thale cress | nucleus | 13.88 | 18.09 |
| KRH21647 | Soybean | nucleus | 16.53 | 18.08 |
| Bra031402.1-P | Field mustard | nucleus | 12.24 | 18.07 |
| AT1G44810.1 | Thale cress | nucleus | 10.82 | 17.91 |
| AT4G00390.1 | Thale cress | nucleus | 13.27 | 17.86 |
| CDY68087 | Canola | nucleus | 11.22 | 17.86 |
| Bra032717.1-P | Field mustard | nucleus | 12.04 | 17.77 |
| VIT_00s0868g00010.t01 | Wine grape | nucleus | 15.71 | 17.62 |
| CDY07275 | Canola | nucleus | 12.86 | 17.6 |
| AT4G00250.1 | Thale cress | nucleus | 11.43 | 17.55 |
| CDX99698 | Canola | nucleus | 11.02 | 17.53 |
| KRH10688 | Soybean | nucleus | 15.51 | 17.39 |
| CDX94469 | Canola | nucleus | 4.69 | 17.04 |
| AT4G00130.1 | Thale cress | mitochondrion | 6.73 | 17.01 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 13.06 | 16.93 |
| CDY61958 | Canola | nucleus | 12.45 | 16.8 |
| CDX97966 | Canola | nucleus | 11.22 | 16.77 |
| VIT_12s0059g02690.t01 | Wine grape | nucleus | 14.9 | 16.74 |
| Bra019847.1-P | Field mustard | nucleus | 12.04 | 16.57 |
| AT4G00610.1 | Thale cress | plastid | 11.02 | 16.46 |
| CDY27657 | Canola | nucleus | 10.2 | 16.45 |
| Bra025445.1-P | Field mustard | nucleus | 10.0 | 15.96 |
| AT1G66420.1 | Thale cress | nucleus | 9.18 | 15.96 |
| CDY52323 | Canola | nucleus | 5.31 | 15.38 |
| CDX89436 | Canola | nucleus | 11.02 | 15.34 |
| AT4G25210.1 | Thale cress | nucleus | 11.43 | 15.22 |
| Bra013873.1-P | Field mustard | nucleus | 11.02 | 15.08 |
| AT1G11510.1 | Thale cress | nucleus | 10.82 | 15.06 |
| CDY26346 | Canola | nucleus | 12.45 | 14.81 |
| CDX92682 | Canola | nucleus | 11.02 | 14.59 |
| AT4G01260.1 | Thale cress | nucleus | 9.59 | 14.46 |
| CDY11061 | Canola | nucleus | 10.61 | 14.25 |
| AT4G00238.1 | Thale cress | nucleus | 9.8 | 13.91 |
| Bra038583.1-P | Field mustard | nucleus | 11.63 | 13.6 |
| AT2G01370.1 | Thale cress | mitochondrion | 6.94 | 13.49 |
| Bra019183.1-P | Field mustard | nucleus | 10.0 | 13.39 |
| AT1G55950.1 | Thale cress | mitochondrion | 5.92 | 13.24 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 3.67 | 2.98 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G241400.1 | EnsemblPlantsGene:TraesCS5D01G241400 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF15 |
| PFAM:PF04504 | SEG:seg | MapMan:15.5.28 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:350322300..350323772
Molecular Weight (calculated)
52060.9 Da
IEP (calculated)
9.660
GRAVY (calculated)
-0.956
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKRSAATA WGSPSDASDA EGDAGHGRRD RDDPPSDTDP SKTPPPNPNP KSSAAAPSST PSVAADSAAA GSDSGGTYDS DAEAHRRPAP KPAASSPKPG
101: GKPRARSPGI NSDSYNSEDS DAEADRRLAA PKAAPSSPKP GGKPRARSPG INSDSEDSAA PVASDADLDP AAGADSEDDN VSPLRSARRP RAEASIIKPI
201: SSRPMDSPPR GSASASEPRV KRPRSAAISA PSPDPLKRPS RLWSHGDELL ILRGLATYRA KSGVLPGSTN DIGKLHSHIR AQLSVRVSTT QLSDKVRRLK
301: QKYQLLATRA KNGREQELHT PHDRSIYEHA KKVWGLVGSG GGDGGGSGYE NYGGGDSDEL QYSGDSDDDM ESQRDDRYHI KNRKVRPITA ANGNGIGLGA
401: VNANGRGKSG LEKGKDAYPY LWETVEELSK EHPSGAAFKK AFEVLEGSKA RAIEEKLRRF RLTEIRQQLR RMDLMKETVR MVLDALESAD
101: GKPRARSPGI NSDSYNSEDS DAEADRRLAA PKAAPSSPKP GGKPRARSPG INSDSEDSAA PVASDADLDP AAGADSEDDN VSPLRSARRP RAEASIIKPI
201: SSRPMDSPPR GSASASEPRV KRPRSAAISA PSPDPLKRPS RLWSHGDELL ILRGLATYRA KSGVLPGSTN DIGKLHSHIR AQLSVRVSTT QLSDKVRRLK
301: QKYQLLATRA KNGREQELHT PHDRSIYEHA KKVWGLVGSG GGDGGGSGYE NYGGGDSDEL QYSGDSDDDM ESQRDDRYHI KNRKVRPITA ANGNGIGLGA
401: VNANGRGKSG LEKGKDAYPY LWETVEELSK EHPSGAAFKK AFEVLEGSKA RAIEEKLRRF RLTEIRQQLR RMDLMKETVR MVLDALESAD
001: MTKKLDPPTA PSSDEDDVET SEDDSSSSEE DEPIKSLPAT TAAAPAKSTA VSAATPAKST SVSAAAPSKS TAVSAAADSD SGSESETDSD SESTDPPKSG
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN
Arabidopsis Description
Probable transcription factor At4g00390 [Source:UniProtKB/Swiss-Prot;Acc:O23063]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.