Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G01370.1 | Thale cress | mitochondrion | 25.89 | 28.97 |
| AT1G44810.1 | Thale cress | nucleus | 26.24 | 25.0 |
| AT1G61730.1 | Thale cress | nucleus | 31.56 | 23.67 |
| AT4G00250.1 | Thale cress | nucleus | 25.53 | 22.57 |
| AT4G00610.1 | Thale cress | plastid | 25.89 | 22.26 |
| AT4G00390.1 | Thale cress | nucleus | 28.37 | 21.98 |
| AT4G00238.1 | Thale cress | nucleus | 25.53 | 20.87 |
| AT4G01260.1 | Thale cress | nucleus | 21.63 | 18.77 |
| AT1G55950.1 | Thale cress | mitochondrion | 14.54 | 18.72 |
| AT1G11510.1 | Thale cress | nucleus | 22.7 | 18.18 |
| AT4G25210.1 | Thale cress | nucleus | 21.99 | 16.85 |
| Os09t0451700-00 | Rice | nucleus | 10.64 | 16.67 |
| AT4G00130.1 | Thale cress | mitochondrion | 10.64 | 15.46 |
| KRH57853 | Soybean | nucleus | 20.92 | 15.25 |
| KRH10688 | Soybean | nucleus | 20.57 | 13.27 |
| KRH21647 | Soybean | nucleus | 20.92 | 13.17 |
| PGSC0003DMT400079215 | Potato | nucleus | 18.44 | 13.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.44 | 12.62 |
| Zm00001d020688_P001 | Maize | nucleus | 16.67 | 10.98 |
| EER96833 | Sorghum | nucleus | 16.67 | 10.63 |
| KXG25358 | Sorghum | nucleus, plastid | 16.31 | 10.57 |
| Zm00001d005865_P001 | Maize | nucleus | 15.96 | 10.27 |
| AT5G28040.2 | Thale cress | nucleus | 14.89 | 9.84 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 15.6 | 9.65 |
| AT3G04930.1 | Thale cress | nucleus | 14.89 | 9.21 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 15.96 | 9.18 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 15.96 | 9.18 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 15.6 | 9.0 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 15.25 | 8.78 |
| Os08t0467600-00 | Rice | nucleus | 15.25 | 8.08 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 1.42 | 0.66 |
Protein Annotations
| MapMan:15.5.28 | EntrezGene:842960 | ProteinID:AAG51162.1 | ProteinID:AAG52170.1 | ProteinID:AEE34507.1 | ArrayExpress:AT1G66420 |
| EnsemblPlantsGene:AT1G66420 | RefSeq:AT1G66420 | TAIR:AT1G66420 | RefSeq:AT1G66420-TAIR-G | EnsemblPlants:AT1G66420.1 | TAIR:AT1G66420.1 |
| Unigene:At.52401 | ProteinID:BAH30358.1 | ncoils:Coil | InterPro:GEBP | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | RefSeq:NP_176815.1 | PFAM:PF04504 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 |
| UniProt:Q9C517 | UniParc:UPI000009CB04 | SEG:seg | : | : | : |
Description
Probable transcription factor At1g66420 [Source:UniProtKB/Swiss-Prot;Acc:Q9C517]
Coordinates
chr1:+:24777184..24778032
Molecular Weight (calculated)
32414.6 Da
IEP (calculated)
7.309
GRAVY (calculated)
-0.839
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKHLKPLE TCFEDEEDDV IYLPPGLVTG ATSKKNEEFC GGSGKVQPSE MKRRSEGTST DMTSKRAKKV SAEDEKKVGE WTKNPYFQRL WSEEDEIVML
101: QGIIKFEDVT GKSPFEDRHG FIEFVKNSIS FEASVQQYIG KISQLKRKYT RKRKNGFSEG HEQKCFKLAM SIWGTKETSK KTDLCSSPKG KKVKEEDGDV
201: TNSDWFENSF LLPSIESLGV DSVKRKWNVV PMEFKKKIEE RLELLEADES ECKKMEEMLK VKNSECVKQK TNLLNEVIDV MT
101: QGIIKFEDVT GKSPFEDRHG FIEFVKNSIS FEASVQQYIG KISQLKRKYT RKRKNGFSEG HEQKCFKLAM SIWGTKETSK KTDLCSSPKG KKVKEEDGDV
201: TNSDWFENSF LLPSIESLGV DSVKRKWNVV PMEFKKKIEE RLELLEADES ECKKMEEMLK VKNSECVKQK TNLLNEVIDV MT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.