Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50767 | Canola | nucleus | 54.61 | 61.48 |
| AT5G28040.2 | Thale cress | nucleus | 57.46 | 61.36 |
| CDY21105 | Canola | nucleus | 47.81 | 61.24 |
| Bra040416.1-P | Field mustard | nucleus | 54.61 | 58.59 |
| CDY41910 | Canola | nucleus | 53.29 | 57.18 |
| CDY30023 | Canola | nucleus | 48.46 | 54.84 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 7.24 | 53.23 |
| Bra040116.1-P | Field mustard | nucleus | 39.69 | 48.79 |
| Os07t0636100-01 | Rice | nucleus | 18.64 | 33.86 |
| Zm00001d022266_P001 | Maize | nucleus | 25.22 | 30.75 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 24.78 | 30.05 |
| Zm00001d006945_P001 | Maize | nucleus | 24.12 | 29.81 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 24.56 | 29.71 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 24.56 | 29.63 |
| EER97613 | Sorghum | nucleus | 24.34 | 29.6 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 22.37 | 29.39 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 24.12 | 29.1 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 25.22 | 28.89 |
| Zm00001d040254_P001 | Maize | nucleus | 25.0 | 28.57 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 21.71 | 28.53 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 25.22 | 28.47 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 21.71 | 28.45 |
| HORVU5Hr1G051570.1 | Barley | plastid | 21.27 | 28.2 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 21.49 | 28.16 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 26.1 | 27.61 |
| EES02686 | Sorghum | nucleus | 24.34 | 27.48 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 23.9 | 27.39 |
| EES02423 | Sorghum | nucleus | 24.34 | 27.34 |
| HORVU2Hr1G027390.1 | Barley | plastid | 22.37 | 27.27 |
| KRG92748 | Soybean | cytosol | 21.27 | 27.17 |
| EER92218 | Sorghum | nucleus | 21.27 | 25.73 |
| Os01t0249900-01 | Rice | plastid | 17.54 | 25.64 |
| Os03t0370250-01 | Rice | cytosol | 22.81 | 25.18 |
| KRH34056 | Soybean | nucleus | 20.61 | 25.07 |
| Zm00001d029287_P001 | Maize | nucleus | 20.83 | 24.8 |
| Zm00001d047421_P001 | Maize | nucleus | 20.39 | 24.8 |
| GSMUA_Achr10P... | Banana | mitochondrion | 21.49 | 23.17 |
| AT4G00130.1 | Thale cress | mitochondrion | 8.55 | 20.1 |
| AT4G01260.1 | Thale cress | nucleus | 13.6 | 19.08 |
| AT2G01370.1 | Thale cress | mitochondrion | 10.09 | 18.25 |
| AT4G00390.1 | Thale cress | nucleus | 14.47 | 18.13 |
| AT1G44810.1 | Thale cress | nucleus | 11.62 | 17.91 |
| AT1G11510.1 | Thale cress | nucleus | 13.16 | 17.05 |
| AT1G61730.1 | Thale cress | nucleus | 13.82 | 16.76 |
| AT4G00250.1 | Thale cress | nucleus | 11.18 | 15.99 |
| AT4G25210.1 | Thale cress | nucleus | 12.72 | 15.76 |
| AT4G00610.1 | Thale cress | plastid | 11.18 | 15.55 |
| AT1G55950.1 | Thale cress | mitochondrion | 7.46 | 15.53 |
| AT1G66420.1 | Thale cress | nucleus | 9.21 | 14.89 |
| AT4G00238.1 | Thale cress | nucleus | 10.96 | 14.49 |
Protein Annotations
| MapMan:15.5.28 | EntrezGene:819653 | ProteinID:AAG51410.1 | EMBL:AB493601 | ProteinID:AEE74159.1 | ProteinID:AEE74160.1 |
| ArrayExpress:AT3G04930 | EnsemblPlantsGene:AT3G04930 | RefSeq:AT3G04930 | TAIR:AT3G04930 | RefSeq:AT3G04930-TAIR-G | EnsemblPlants:AT3G04930.1 |
| TAIR:AT3G04930.1 | EMBL:AY070136 | EMBL:AY079045 | ncoils:Coil | InterPro:GEBP | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | RefSeq:NP_001189809.1 | RefSeq:NP_187144.1 | PFAM:PF04504 |
| PO:PO:0000293 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF6 | UniProt:Q9CAV7 | UniParc:UPI000009D36C | SEG:seg |
Description
Probable transcription factor At3g04930 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV7]
Coordinates
chr3:+:1362497..1364799
Molecular Weight (calculated)
49710.1 Da
IEP (calculated)
4.610
GRAVY (calculated)
-0.601
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.