Factsheet for Bra040416.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50767	Canola	nucleus	94.12	98.77
Bra009986.1-P	Field mustard	nucleus	55.53	57.0
VIT_14s0030g01600.t01	Wine grape	cytosol, mitochondrion	8.0	54.84
AT3G04930.1	Thale cress	nucleus	58.59	54.61
Bra040116.1-P	Field mustard	nucleus	44.0	50.4
Bra036116.1-P	Field mustard	nucleus	39.53	46.93
Os07t0636100-01	Rice	nucleus	18.12	30.68
Zm00001d022266_P001	Maize	nucleus	25.65	29.14
Zm00001d006945_P001	Maize	nucleus	24.94	28.73
Zm00001d040254_P001	Maize	nucleus	26.35	28.07
TraesCS4B01G159600.1	Wheat	nucleus	22.82	27.95
GSMUA_Achr8P22220_001	Banana	nucleus	28.24	27.84
TraesCS2A01G151700.1	Wheat	nucleus	24.47	27.51
HORVU5Hr1G051570.1	Barley	plastid	22.12	27.33
HORVU2Hr1G027390.1	Barley	plastid	24.0	27.27
EER97613	Sorghum	nucleus	24.0	27.2
KRG92748	Soybean	cytosol	22.82	27.17
TraesCS4D01G163600.1	Wheat	nucleus	22.12	27.09
TraesCS2B01G176900.1	Wheat	nucleus	24.0	27.06
EES02686	Sorghum	nucleus	25.65	26.98
Os01t0249900-01	Rice	plastid	19.76	26.92
EES02423	Sorghum	nucleus	25.65	26.85
TraesCS2D01G156800.1	Wheat	nucleus	23.76	26.72
TraesCS4A01G138100.1	Wheat	nucleus	21.65	26.44
TraesCS3B01G200500.1	Wheat	nucleus	23.29	26.33
HORVU4Hr1G045570.1	Barley	nucleus	21.41	26.15
TraesCS3D01G176400.1	Wheat	nucleus	24.24	25.88
TraesCS3A01G165200.1	Wheat	nucleus	24.24	25.88
EER92218	Sorghum	nucleus	22.59	25.46
KRH34056	Soybean	nucleus	22.12	25.07
HORVU3Hr1G034150.3	Barley	nucleus	23.53	24.75
GSMUA_Achr10P...	Banana	mitochondrion	24.47	24.59
Zm00001d047421_P001	Maize	nucleus	21.18	24.0
Os03t0370250-01	Rice	cytosol	23.06	23.73
Zm00001d029287_P001	Maize	nucleus	20.71	22.98
Bra025445.1-P	Field mustard	nucleus	14.35	19.87
Bra021317.1-P	Field mustard	nucleus	14.35	19.81
Bra013873.1-P	Field mustard	nucleus	16.47	19.55
Bra019183.1-P	Field mustard	nucleus	16.47	19.13
Bra031402.1-P	Field mustard	nucleus	14.59	18.67
Bra019847.1-P	Field mustard	nucleus	14.82	17.7
Bra027078.1-P	Field mustard	nucleus	14.82	16.58
Bra034488.1-P	Field mustard	nucleus	12.47	16.46
Bra032717.1-P	Field mustard	nucleus	12.47	15.96
Bra038583.1-P	Field mustard	nucleus	15.06	15.27

Protein Annotations

EnsemblPlants:Bra040416.1	EnsemblPlants:Bra040416.1-P	EnsemblPlantsGene:Bra040416	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	ncoils:Coil	PANTHER:PTHR31662
PANTHER:PTHR31662:SF6	PFAM:PF04504	SEG:seg	UniParc:UPI000253ED04	UniProt:M4FH38	MapMan:15.5.28

Description

AT3G04930 (E=4e-122) | transcription regulator

Coordinates

chrScaffold000203:+:97200..98477

Molecular Weight (calculated)

46798.6 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.638

Length

425 amino acids

Sequence
(BLAST)

001: MTSDQRDVVF SLESPDLEEG AAGDGGESDT DENDDVAIPE TNEEPEDDDP EEEDLTAVTV TVSASSTDAV TVALPAGSAV PVSVIPVDSS DPKWHRVTEI
101: VHHQRPLPPP TPIDDSRRLF QRLWTDEDEI ELLRGFLDYV ATHRGGNSSH PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR LKKKYRNVMS KISSGKEVFF
201: KSPHDQSTFE ISRKIWNQTG KIIGFEDNNA MDFEETNTNG NYFNSPGGLN PSNVEIDSEN GVERRLMMSS SSGGSRKRSR SRIGKIEEDN KPIITPSEGQ
301: TPNAASNVNL NEPATAVVGG NIGVLIEETV KNCVSPVIKE MMNGTTSMMM AAMGGGGNGH GFGSFSPVFT RPLGYGVEGG NKAVSDERWR KQQILELEVY
401: SRRLELVQEQ IRATLHELKT MPSGV

Best Arabidopsis Sequence Match ( AT3G04930.1 )
(BLAST)

001: MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI

Arabidopsis Description

Probable transcription factor At3g04930 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.