Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G051570.1 | Barley | plastid | 50.96 | 46.22 |
| Zm00001d040254_P001 | Maize | nucleus | 56.73 | 44.36 |
| EES02423 | Sorghum | nucleus | 56.41 | 43.35 |
| EES02686 | Sorghum | nucleus | 54.49 | 42.08 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 8.33 | 41.94 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 51.92 | 40.7 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 48.72 | 40.43 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 50.64 | 39.7 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 50.96 | 39.36 |
| Os07t0636100-01 | Rice | nucleus | 21.15 | 26.29 |
| Os03t0370250-01 | Rice | cytosol | 32.05 | 24.21 |
| KRH34055 | Soybean | nucleus | 27.88 | 23.39 |
| KRG92750 | Soybean | nucleus | 26.28 | 23.23 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 30.45 | 22.04 |
| CDY21105 | Canola | nucleus | 25.0 | 21.91 |
| CDY00009 | Canola | nucleus | 26.92 | 21.32 |
| KRH68705 | Soybean | nucleus | 27.56 | 21.23 |
| KRG96940 | Soybean | nucleus | 26.92 | 20.79 |
| CDY41910 | Canola | nucleus | 27.24 | 20.0 |
| CDY50767 | Canola | nucleus | 25.96 | 20.0 |
| Os09t0451700-00 | Rice | nucleus | 11.54 | 20.0 |
| Bra040416.1-P | Field mustard | nucleus | 26.92 | 19.76 |
| CDX80681 | Canola | nucleus | 25.96 | 19.71 |
| PGSC0003DMT400009206 | Potato | nucleus | 26.28 | 19.52 |
| GSMUA_Achr10P... | Banana | mitochondrion | 26.28 | 19.39 |
| CDY30023 | Canola | nucleus | 24.68 | 19.11 |
| Bra009986.1-P | Field mustard | nucleus | 25.32 | 19.08 |
| AT5G28040.2 | Thale cress | nucleus | 25.64 | 18.74 |
| Solyc02g083750.1.1 | Tomato | nucleus | 25.0 | 18.53 |
| PGSC0003DMT400057863 | Potato | nucleus | 25.32 | 17.67 |
| KRG92748 | Soybean | cytosol | 20.19 | 17.65 |
| AT3G04930.1 | Thale cress | nucleus | 25.64 | 17.54 |
| Bra040116.1-P | Field mustard | nucleus | 20.83 | 17.52 |
| Solyc01g097890.2.1 | Tomato | nucleus | 25.32 | 17.44 |
| KRH34056 | Soybean | nucleus | 18.27 | 15.2 |
| Bra036116.1-P | Field mustard | nucleus | 17.31 | 15.08 |
| CDY68986 | Canola | nucleus | 16.03 | 14.75 |
| CDX86188 | Canola | cytosol | 25.96 | 13.46 |
| Os08t0467600-00 | Rice | nucleus | 15.06 | 8.83 |
Protein Annotations
| EMBL:AK072886 | EnsemblPlants:Os01t0249900-01 | EnsemblPlantsGene:Os01g0249900 | EntrezGene:4327221 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil |
| PANTHER:PTHR31662 | PANTHER:PTHR31662:SF14 | PFAM:PF04504 | ProteinID:BAD81210.1 | ProteinID:BAF04505.1 | ProteinID:BAS71343.1 |
| RefSeq:XP_015644705.1 | SEG:seg | UniParc:UPI000049E6D0 | UniProt:Q5NBE6 | MapMan:15.5.28 | : |
Description
Protein of unknown function DUF573 family protein. (Os01t0249900-01)
Coordinates
chr1:-:8234625..8235833
Molecular Weight (calculated)
33405.9 Da
IEP (calculated)
7.668
GRAVY (calculated)
-0.246
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MPCGYGVPII STLDFTARRG TTFASHQYDT GPFYDEIRRR LSFDFTKSQL VEKLRRLKKK YRLCAARMAS SPHAAAAGFA FRTPHEGAIY DLARHIWPPA
101: LKRDGTASDD DDINPAAAAA TAAVMTPVAM EDGFGGSAPT PTPTPRGRGG RRVRRRMAQE QEAAALPSAP ALTSTDGAHQ EPLVAAMENT LPQIAQLPPV
201: SETEPMPVIA NGANEEAVRS VLSRLLKEFI TSFAVVGQTG PGMGLNMGFG GAGLNADIAG LGFGIAGLNP GVPGADRWRQ HQILELEVYL KRIELVREQV
301: TAALDELRSS EG
101: LKRDGTASDD DDINPAAAAA TAAVMTPVAM EDGFGGSAPT PTPTPRGRGG RRVRRRMAQE QEAAALPSAP ALTSTDGAHQ EPLVAAMENT LPQIAQLPPV
201: SETEPMPVIA NGANEEAVRS VLSRLLKEFI TSFAVVGQTG PGMGLNMGFG GAGLNADIAG LGFGIAGLNP GVPGADRWRQ HQILELEVYL KRIELVREQV
301: TAALDELRSS EG
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.