Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21105 | Canola | nucleus | 75.19 | 85.11 |
| Bra040116.1-P | Field mustard | nucleus | 67.0 | 72.78 |
| CDY50767 | Canola | nucleus | 59.55 | 59.26 |
| CDY41910 | Canola | nucleus | 61.54 | 58.35 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 8.19 | 53.23 |
| CDX80681 | Canola | nucleus | 53.1 | 52.07 |
| CDY00009 | Canola | nucleus | 50.12 | 51.27 |
| AT3G04930.1 | Thale cress | nucleus | 54.84 | 48.46 |
| CDY68986 | Canola | nucleus | 32.01 | 38.05 |
| CDX86188 | Canola | cytosol | 52.36 | 35.05 |
| Os07t0636100-01 | Rice | nucleus | 19.85 | 31.87 |
| Zm00001d022266_P001 | Maize | nucleus | 26.8 | 28.88 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 27.05 | 28.84 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 26.55 | 28.38 |
| KRG92748 | Soybean | cytosol | 25.06 | 28.29 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 24.32 | 28.24 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 26.3 | 28.19 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 26.3 | 28.04 |
| EER97613 | Sorghum | nucleus | 26.05 | 28.0 |
| Zm00001d006945_P001 | Maize | nucleus | 25.56 | 27.91 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 24.07 | 27.87 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 23.82 | 27.67 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 23.82 | 27.59 |
| Zm00001d040254_P001 | Maize | nucleus | 26.8 | 27.07 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 28.78 | 26.91 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 26.55 | 26.88 |
| HORVU5Hr1G051570.1 | Barley | plastid | 22.83 | 26.74 |
| HORVU2Hr1G027390.1 | Barley | plastid | 24.81 | 26.74 |
| EER92218 | Sorghum | nucleus | 24.81 | 26.53 |
| KRH34056 | Soybean | nucleus | 24.57 | 26.4 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 25.81 | 26.13 |
| GSMUA_Achr10P... | Banana | mitochondrion | 27.3 | 26.0 |
| EES02686 | Sorghum | nucleus | 26.05 | 25.99 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 25.31 | 25.25 |
| EES02423 | Sorghum | nucleus | 25.31 | 25.12 |
| CDY52323 | Canola | nucleus | 10.42 | 24.85 |
| Os01t0249900-01 | Rice | plastid | 19.11 | 24.68 |
| Zm00001d047421_P001 | Maize | nucleus | 22.83 | 24.53 |
| Os03t0370250-01 | Rice | cytosol | 25.06 | 24.46 |
| Zm00001d029287_P001 | Maize | nucleus | 23.08 | 24.28 |
| CDY32382 | Canola | nucleus | 14.39 | 20.57 |
| CDX89436 | Canola | nucleus | 16.87 | 19.32 |
| CDX97966 | Canola | nucleus | 15.38 | 18.9 |
| CDY18747 | Canola | nucleus | 16.38 | 18.49 |
| CDY11061 | Canola | nucleus | 16.13 | 17.81 |
| CDY12911 | Canola | nucleus | 8.44 | 17.62 |
| CDY61958 | Canola | nucleus | 15.38 | 17.08 |
| CDY07275 | Canola | nucleus | 15.14 | 17.04 |
| CDY01140 | Canola | nucleus | 11.66 | 17.03 |
| CDX92682 | Canola | nucleus | 15.63 | 17.03 |
| CDY68087 | Canola | nucleus | 12.66 | 16.56 |
| CDY49787 | Canola | nucleus | 15.14 | 16.44 |
| CDX99698 | Canola | nucleus | 12.41 | 16.23 |
| CDY27657 | Canola | nucleus | 12.16 | 16.12 |
| CDY26346 | Canola | nucleus | 16.38 | 16.02 |
| CDX94469 | Canola | nucleus | 4.22 | 12.59 |
Protein Annotations
| EnsemblPlants:CDY30023 | EnsemblPlantsGene:GSBRNA2T00044558001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF6 |
| PFAM:PF04504 | ProteinID:CDY30023 | ProteinID:CDY30023.1 | SEG:seg | UniParc:UPI0004EB6CA7 | UniProt:A0A078GZL9 |
| MapMan:15.5.28 | : | : | : | : | : |
Description
BnaC01g39850DBnaC01g39850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZL9]
Coordinates
chrLK032247:-:480408..481898
Molecular Weight (calculated)
44896.7 Da
IEP (calculated)
6.268
GRAVY (calculated)
-0.740
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSDHRDAVF SIDSPDHEGG GAGDGGESDT DDDVALPETN DDLNSPYNVT VALPSGSAVP VSAIPADSSP KWRRATEIVH RRQQQPPPPP PAAAIDDSRR
101: LFQRLWTDED EIELLRGFLD YVTTHRGGSN PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR LKKKYRNVMS KFGSGKEVLF KSPHDQSTFE ISRKIWNRTG
201: KIIGFEMDFE EANVNDNSPG SNPSAAVEIE SENGVEKKGS RKRSRSRIGK IEEDNNVNVN ETVSASIGGL IEETVRSCVS PLIKEMMNGT TSMMMAGSLG
301: PVLTRPLGYG VEGAGGNKGV RDERWRKQLI LELEVYSRRL ELVQEEIRAT LHELKTMPSG ACAVYHVDHR ERSSVGFRMC YDRNSKFNGG THSREPFTTR
401: SPD
101: LFQRLWTDED EIELLRGFLD YVTTHRGGSN PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR LKKKYRNVMS KFGSGKEVLF KSPHDQSTFE ISRKIWNRTG
201: KIIGFEMDFE EANVNDNSPG SNPSAAVEIE SENGVEKKGS RKRSRSRIGK IEEDNNVNVN ETVSASIGGL IEETVRSCVS PLIKEMMNGT TSMMMAGSLG
301: PVLTRPLGYG VEGAGGNKGV RDERWRKQLI LELEVYSRRL ELVQEEIRAT LHELKTMPSG ACAVYHVDHR ERSSVGFRMC YDRNSKFNGG THSREPFTTR
401: SPD
001: MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
Arabidopsis Description
Probable transcription factor At3g04930 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.