Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038583.1-P | Field mustard | nucleus | 74.76 | 73.51 |
| CDX99698 | Canola | nucleus | 29.85 | 39.94 |
| CDY27657 | Canola | nucleus | 27.91 | 37.83 |
| CDX97966 | Canola | nucleus | 24.51 | 30.79 |
| CDY32382 | Canola | nucleus | 19.42 | 28.37 |
| CDY49787 | Canola | nucleus | 25.49 | 28.3 |
| CDY52323 | Canola | nucleus | 11.16 | 27.22 |
| CDY12911 | Canola | nucleus | 12.14 | 25.91 |
| CDY61958 | Canola | nucleus | 21.6 | 24.52 |
| CDY18747 | Canola | nucleus | 20.39 | 23.53 |
| AT1G11510.1 | Thale cress | nucleus | 19.66 | 23.01 |
| CDY07275 | Canola | nucleus | 19.9 | 22.91 |
| CDY01140 | Canola | nucleus | 15.05 | 22.46 |
| CDY68087 | Canola | nucleus | 16.75 | 22.4 |
| Os09t0451700-00 | Rice | nucleus | 9.47 | 21.67 |
| PGSC0003DMT400079215 | Potato | nucleus | 18.2 | 18.8 |
| KRH21647 | Soybean | nucleus | 20.39 | 18.75 |
| CDY21105 | Canola | nucleus | 15.53 | 17.98 |
| KRH10688 | Soybean | nucleus | 18.93 | 17.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.72 | 17.72 |
| CDX92682 | Canola | nucleus | 15.78 | 17.57 |
| CDX89436 | Canola | nucleus | 14.56 | 17.05 |
| CDY30023 | Canola | nucleus | 16.02 | 16.38 |
| CDY00009 | Canola | nucleus | 15.53 | 16.24 |
| CDX80681 | Canola | nucleus | 16.02 | 16.06 |
| KRH57853 | Soybean | nucleus | 15.05 | 16.02 |
| CDY11061 | Canola | nucleus | 13.84 | 15.62 |
| CDY50767 | Canola | nucleus | 14.56 | 14.81 |
| Zm00001d020688_P001 | Maize | nucleus | 14.32 | 13.79 |
| CDY41910 | Canola | nucleus | 14.08 | 13.65 |
| Zm00001d005865_P001 | Maize | nucleus | 14.08 | 13.24 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 15.05 | 12.65 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 13.84 | 12.5 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 14.81 | 12.45 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 14.81 | 12.45 |
| EER96833 | Sorghum | nucleus | 13.35 | 12.44 |
| Os08t0467600-00 | Rice | nucleus | 15.78 | 12.22 |
| CDY68986 | Canola | nucleus | 9.95 | 12.09 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 14.32 | 12.07 |
| KXG25358 | Sorghum | nucleus, plastid | 12.62 | 11.95 |
| CDX94469 | Canola | nucleus | 3.88 | 11.85 |
| CDX86188 | Canola | cytosol | 15.53 | 10.63 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 3.88 | 2.65 |
Protein Annotations
| EnsemblPlants:CDY26346 | EnsemblPlantsGene:GSBRNA2T00035086001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDY26346 | ProteinID:CDY26346.1 | SEG:seg | UniParc:UPI0004EDC641 | UniProt:A0A078GLX3 | MapMan:15.5.28 |
Description
BnaA03g60220DBnaA03g60220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLX3]
Coordinates
chrLK032188:+:395117..396355
Molecular Weight (calculated)
45727.6 Da
IEP (calculated)
4.984
GRAVY (calculated)
-1.009
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPNKTHSQV TPLKNRKKKT KEKVMTVEHL QDQQSASASD EDSVENSLSS EEEEETDSKK GETSKTRANS SSPVTKPPPA DSNKVETSKK RSSETDEGEE
101: AKRVKRVSLS GDGDNKKSTS SSEEETDSES ETESVADSKI VETSSKPKTT ANSLSEVATV SSSYEDSSSS SGDEETDPPV PNPVVEPPAD SSRKVVEASS
201: KKQPSIETDE GEAKRDTKKN YFQRVWTEED EIVILQGIID YQFETGSNPF DDKNALYELL KKSVSFNPTK IQFLEKIRGL KKKFDSNLGK EKKKGEELVF
301: SKSHDLEAFR LSKFVWKDHD GITANAIGVE PAVLKLVEPK QGSVSLVESV TRFGMDGLVA KKGWSRLSSE DKKSLEEEWE ALALEEFKFY SRKSRIIHDA
401: IAKMAEASQP DH
101: AKRVKRVSLS GDGDNKKSTS SSEEETDSES ETESVADSKI VETSSKPKTT ANSLSEVATV SSSYEDSSSS SGDEETDPPV PNPVVEPPAD SSRKVVEASS
201: KKQPSIETDE GEAKRDTKKN YFQRVWTEED EIVILQGIID YQFETGSNPF DDKNALYELL KKSVSFNPTK IQFLEKIRGL KKKFDSNLGK EKKKGEELVF
301: SKSHDLEAFR LSKFVWKDHD GITANAIGVE PAVLKLVEPK QGSVSLVESV TRFGMDGLVA KKGWSRLSSE DKKSLEEEWE ALALEEFKFY SRKSRIIHDA
401: IAKMAEASQP DH
001: MSRRFNPLED PPSASSSDEE GKEIARNSSS DDEDDVSSEN PSPLKTTLDA VSDSESGSDE ETDSDSELEK KKDQVVTNPV DVKRAKKVSG EEEKKKSGGG
101: GEETKKTYFQ RLWTEDDEIV VLQGLIDDKK DTGVSNTNKV YELVKKSISF DVSKNQLMEK LRALKKKYEN NLGKAKDGVE PTFVKPHDRK AFELSKLVWG
201: GIRMALASGM KSNEKSKKSS KFESVKHELD SSLPNSKNNC EDEVMDEGEV SFTKSSLVRS IVGLGMDELT AQQGLSKLAS KDMKRFYEQW KAMQAREFEF
301: FLQKHGFLFE VLSKISEAFG SNA
101: GEETKKTYFQ RLWTEDDEIV VLQGLIDDKK DTGVSNTNKV YELVKKSISF DVSKNQLMEK LRALKKKYEN NLGKAKDGVE PTFVKPHDRK AFELSKLVWG
201: GIRMALASGM KSNEKSKKSS KFESVKHELD SSLPNSKNNC EDEVMDEGEV SFTKSSLVRS IVGLGMDELT AQQGLSKLAS KDMKRFYEQW KAMQAREFEF
301: FLQKHGFLFE VLSKISEAFG SNA
Arabidopsis Description
Probable transcription factor At1g11510 [Source:UniProtKB/Swiss-Prot;Acc:C0SUU6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.