Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50767 | Canola | nucleus | 72.71 | 76.3 |
| CDY21105 | Canola | nucleus | 54.35 | 64.89 |
| CDY30023 | Canola | nucleus | 58.35 | 61.54 |
| CDX80681 | Canola | nucleus | 51.76 | 53.53 |
| AT3G04930.1 | Thale cress | nucleus | 57.18 | 53.29 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 7.76 | 53.23 |
| CDY00009 | Canola | nucleus | 48.71 | 52.54 |
| CDY68986 | Canola | nucleus | 29.88 | 37.46 |
| CDX86188 | Canola | cytosol | 51.06 | 36.05 |
| Zm00001d022266_P001 | Maize | nucleus | 26.59 | 30.21 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 26.59 | 29.89 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 26.12 | 29.44 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 25.88 | 29.1 |
| Os07t0636100-01 | Rice | nucleus | 17.18 | 29.08 |
| Zm00001d040254_P001 | Maize | nucleus | 27.06 | 28.82 |
| EER97613 | Sorghum | nucleus | 25.41 | 28.8 |
| HORVU2Hr1G027390.1 | Barley | plastid | 25.18 | 28.61 |
| HORVU5Hr1G051570.1 | Barley | plastid | 23.06 | 28.49 |
| Zm00001d006945_P001 | Maize | nucleus | 24.71 | 28.46 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 24.94 | 28.19 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 22.82 | 27.95 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 28.0 | 27.61 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 22.35 | 27.3 |
| Os01t0249900-01 | Rice | plastid | 20.0 | 27.24 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 22.12 | 27.09 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 22.12 | 27.01 |
| EES02686 | Sorghum | nucleus | 25.65 | 26.98 |
| KRG92748 | Soybean | cytosol | 22.59 | 26.89 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 25.18 | 26.88 |
| EES02423 | Sorghum | nucleus | 25.65 | 26.85 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 24.94 | 26.63 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 25.18 | 26.49 |
| EER92218 | Sorghum | nucleus | 23.06 | 25.99 |
| KRH34056 | Soybean | nucleus | 22.59 | 25.6 |
| Zm00001d047421_P001 | Maize | nucleus | 21.88 | 24.8 |
| Zm00001d029287_P001 | Maize | nucleus | 22.12 | 24.54 |
| GSMUA_Achr10P... | Banana | mitochondrion | 24.0 | 24.11 |
| Os03t0370250-01 | Rice | cytosol | 23.29 | 23.97 |
| CDY52323 | Canola | nucleus | 8.71 | 21.89 |
| CDX89436 | Canola | nucleus | 16.71 | 20.17 |
| CDY18747 | Canola | nucleus | 16.94 | 20.17 |
| CDY32382 | Canola | nucleus | 12.94 | 19.5 |
| CDY27657 | Canola | nucleus | 13.65 | 19.08 |
| CDY07275 | Canola | nucleus | 15.76 | 18.72 |
| CDY12911 | Canola | nucleus | 8.47 | 18.65 |
| CDX97966 | Canola | nucleus | 14.35 | 18.6 |
| CDX99698 | Canola | nucleus | 13.41 | 18.51 |
| CDY11061 | Canola | nucleus | 15.29 | 17.81 |
| CDY61958 | Canola | nucleus | 14.59 | 17.08 |
| CDY01140 | Canola | nucleus | 11.06 | 17.03 |
| CDX92682 | Canola | nucleus | 14.82 | 17.03 |
| CDY68087 | Canola | nucleus | 12.0 | 16.56 |
| CDY49787 | Canola | nucleus | 14.35 | 16.44 |
| CDY26346 | Canola | nucleus | 13.65 | 14.08 |
| CDX94469 | Canola | nucleus | 4.24 | 13.33 |
Protein Annotations
| EnsemblPlants:CDY41910 | EnsemblPlantsGene:GSBRNA2T00073890001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF6 |
| PFAM:PF04504 | ProteinID:CDY41910 | ProteinID:CDY41910.1 | SEG:seg | UniParc:UPI0004EE4C0C | UniProt:A0A078HTK5 |
| MapMan:15.5.28 | : | : | : | : | : |
Description
BnaC05g46940DBnaC05g46940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTK5]
Coordinates
chrLK032510:+:100284..102160
Molecular Weight (calculated)
46754.6 Da
IEP (calculated)
4.569
GRAVY (calculated)
-0.638
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSDQRDVVF SLESPDLEEG AAGESDTDEN DDVAIPETNE EPEEDDPEEE DLTTAVTVSA SSTDAVTVAL PAGSAVPVSV IPVDSSDPKW HRVTEIVHHL
101: RPPPPPQPPI DDSRRLFQRL WTDEDEIELL RGFLDYVATH RGGNSSHPPD TAPFYEMIKS KLQLEFNKNQ LVEKLRRLKK KYRNVMSKIS SGKEVFFKSP
201: HDQSTFEISR KIWNQTGKII GFEDNNAMDF EETNTNGNYF NSPGSNPSNV EIDSENGVEK RLMMMSSSSG GSRKRSRSRI GKIEEDNKPV ITPSDVQTPN
301: AASNVNLNEP ATAVVGGNIG VLIEETVKNC VSPVIKEMMN GTTSMMMAAM GGGGGNGHGF GSFSPVFTRP LGYGVEGGGG NKAVSDEQWR KQQILELEVY
401: SRRLELVQEQ IRATLHELKT MPSGV
101: RPPPPPQPPI DDSRRLFQRL WTDEDEIELL RGFLDYVATH RGGNSSHPPD TAPFYEMIKS KLQLEFNKNQ LVEKLRRLKK KYRNVMSKIS SGKEVFFKSP
201: HDQSTFEISR KIWNQTGKII GFEDNNAMDF EETNTNGNYF NSPGSNPSNV EIDSENGVEK RLMMMSSSSG GSRKRSRSRI GKIEEDNKPV ITPSDVQTPN
301: AASNVNLNEP ATAVVGGNIG VLIEETVKNC VSPVIKEMMN GTTSMMMAAM GGGGGNGHGF GSFSPVFTRP LGYGVEGGGG NKAVSDEQWR KQQILELEVY
401: SRRLELVQEQ IRATLHELKT MPSGV
001: MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
Arabidopsis Description
Probable transcription factor At3g04930 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.