Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27657 | Canola | nucleus | 54.55 | 55.26 |
| CDX97966 | Canola | nucleus | 42.53 | 39.94 |
| CDY12911 | Canola | nucleus | 22.73 | 36.27 |
| CDY32382 | Canola | nucleus | 33.12 | 36.17 |
| CDY49787 | Canola | nucleus | 41.88 | 34.77 |
| CDY52323 | Canola | nucleus | 17.21 | 31.36 |
| CDY61958 | Canola | nucleus | 36.04 | 30.58 |
| CDY26346 | Canola | nucleus | 39.94 | 29.85 |
| CDY01140 | Canola | nucleus | 25.65 | 28.62 |
| CDY18747 | Canola | nucleus | 33.12 | 28.57 |
| CDY07275 | Canola | nucleus | 33.12 | 28.49 |
| AT1G11510.1 | Thale cress | nucleus | 32.47 | 28.41 |
| CDY68087 | Canola | nucleus | 27.27 | 27.27 |
| Os09t0451700-00 | Rice | nucleus | 13.96 | 23.89 |
| CDX89436 | Canola | nucleus | 23.7 | 20.74 |
| CDX94469 | Canola | nucleus | 8.77 | 20.0 |
| PGSC0003DMT400079215 | Potato | nucleus | 25.65 | 19.8 |
| CDX92682 | Canola | nucleus | 22.08 | 18.38 |
| KRH21647 | Soybean | nucleus | 25.65 | 17.63 |
| KRH57853 | Soybean | nucleus | 22.08 | 17.57 |
| CDY11061 | Canola | nucleus | 20.78 | 17.53 |
| KRH10688 | Soybean | nucleus | 22.73 | 16.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.48 | 14.56 |
| CDY00009 | Canola | nucleus | 18.51 | 14.47 |
| CDY21105 | Canola | nucleus | 16.23 | 14.04 |
| CDY50767 | Canola | nucleus | 17.86 | 13.58 |
| CDY41910 | Canola | nucleus | 18.51 | 13.41 |
| CDX80681 | Canola | nucleus | 16.88 | 12.65 |
| CDY30023 | Canola | nucleus | 16.23 | 12.41 |
| Zm00001d020688_P001 | Maize | nucleus | 16.23 | 11.68 |
| EER96833 | Sorghum | nucleus | 16.23 | 11.31 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 17.53 | 11.02 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 17.21 | 10.84 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 17.21 | 10.82 |
| Zm00001d005865_P001 | Maize | nucleus | 15.26 | 10.73 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 16.88 | 10.61 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 15.26 | 10.31 |
| CDY68986 | Canola | nucleus | 11.04 | 10.03 |
| KXG25358 | Sorghum | nucleus, plastid | 13.96 | 9.89 |
| Os08t0467600-00 | Rice | nucleus | 16.88 | 9.77 |
| CDX86188 | Canola | cytosol | 18.83 | 9.63 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 5.52 | 2.81 |
Protein Annotations
| EnsemblPlants:CDX99698 | EnsemblPlantsGene:GSBRNA2T00108266001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 |
| PFAM:PF04504 | ProteinID:CDX99698 | ProteinID:CDX99698.1 | SEG:seg | UniParc:UPI0004EE9745 | MapMan:15.5.28 |
Description
BnaC04g34550D
Coordinates
chrLK031912:-:1232616..1233542
Molecular Weight (calculated)
34778.6 Da
IEP (calculated)
5.863
GRAVY (calculated)
-1.015
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKLLKKLE DPPIASSSSE EEDDEDAVAN SSSEEEEETD SETEAEPVAK PLAKPPADSR KVETSSKPET KKKRSSEADE GEEAKRVKRV SGEDDHKKSK
101: GEETKKSCFQ RVWTEEDEIA VLQGIIDYKN ETGSSPYDDK NALYDLVKKS VSFDVTKTQF MEKIRALKKK FENNLGRCKK KGKDPSFSKA HDRKAFDLAK
201: LVWGDNGIMA LEPLSAVKSK KVEHAVKKQE EPAVKKQEFV PIVDLVARFG VDDLAAKQGW SRLSSEDKER FEEQWKALQL KEFKFYSQKS GFIHEVVTKM
301: AEASRPDH
101: GEETKKSCFQ RVWTEEDEIA VLQGIIDYKN ETGSSPYDDK NALYDLVKKS VSFDVTKTQF MEKIRALKKK FENNLGRCKK KGKDPSFSKA HDRKAFDLAK
201: LVWGDNGIMA LEPLSAVKSK KVEHAVKKQE EPAVKKQEFV PIVDLVARFG VDDLAAKQGW SRLSSEDKER FEEQWKALQL KEFKFYSQKS GFIHEVVTKM
301: AEASRPDH
001: MSRRFNPLED PPSASSSDEE GKEIARNSSS DDEDDVSSEN PSPLKTTLDA VSDSESGSDE ETDSDSELEK KKDQVVTNPV DVKRAKKVKT SEKSGAKRSL
101: EVDEAAVSMD VKRAKKVSGE EEKKKSGGGG EETKKTYFQR LWTEDDEIVV LQGLIDDKKD TGVSNTNKVY ELVKKSISFD VSKNQLMEKL RALKKKYENN
201: LGKAKDGVEP TFVKPHDRKA FELSKLVWGG IRMALASGMK SNEKSKKSSK FESVKHELDS SLPNSKNNCE DEVMDEGEVS FTKSSLVRSI VGLGMDELTA
301: QQGLSKLASK DMKRFYEQWK AMQAREFEFF LQKHGFLFEV LSKISEAFGS NA
101: EVDEAAVSMD VKRAKKVSGE EEKKKSGGGG EETKKTYFQR LWTEDDEIVV LQGLIDDKKD TGVSNTNKVY ELVKKSISFD VSKNQLMEKL RALKKKYENN
201: LGKAKDGVEP TFVKPHDRKA FELSKLVWGG IRMALASGMK SNEKSKKSSK FESVKHELDS SLPNSKNNCE DEVMDEGEVS FTKSSLVRSI VGLGMDELTA
301: QQGLSKLASK DMKRFYEQWK AMQAREFEFF LQKHGFLFEV LSKISEAFGS NA
Arabidopsis Description
Probable transcription factor At1g11510 [Source:UniProtKB/Swiss-Prot;Acc:C0SUU6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.