CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80681	Canola	nucleus	54.32	79.56
AT5G28040.2	Thale cress	nucleus	43.52	61.36
CDY21105	Canola	nucleus	33.89	57.3
CDY00009	Canola	nucleus	36.88	56.35
CDY50767	Canola	nucleus	36.05	53.58
VIT_14s0030g01600.t01	Wine grape	cytosol, mitochondrion	5.48	53.23
CDY30023	Canola	nucleus	35.05	52.36
CDY41910	Canola	nucleus	36.05	51.06
CDY68986	Canola	nucleus	23.26	41.3
Os07t0636100-01	Rice	nucleus	12.79	30.68
Zm00001d006945_P001	Maize	nucleus	18.27	29.81
TraesCS4B01G159600.1	Wheat	nucleus	17.11	29.68
Zm00001d022266_P001	Maize	nucleus	18.44	29.68
TraesCS4A01G138100.1	Wheat	nucleus	17.11	29.6
TraesCS3B01G200500.1	Wheat	nucleus	18.44	29.52
TraesCS4D01G163600.1	Wheat	nucleus	16.78	29.11
EER97613	Sorghum	nucleus	18.11	29.07
TraesCS2D01G156800.1	Wheat	nucleus	18.11	28.84
TraesCS2A01G151700.1	Wheat	nucleus	18.11	28.84
HORVU4Hr1G045570.1	Barley	nucleus	16.61	28.74
TraesCS2B01G176900.1	Wheat	nucleus	17.94	28.65
Zm00001d040254_P001	Maize	nucleus	18.94	28.57
HORVU5Hr1G051570.1	Barley	plastid	16.28	28.49
KRG92748	Soybean	cytosol	16.78	28.29
TraesCS3D01G176400.1	Wheat	nucleus	18.44	27.89
HORVU2Hr1G027390.1	Barley	plastid	17.28	27.81
GSMUA_Achr8P22220_001	Banana	nucleus	19.6	27.38
EES02686	Sorghum	nucleus	18.27	27.23
HORVU3Hr1G034150.3	Barley	nucleus	18.11	26.98
KRH34056	Soybean	nucleus	16.78	26.93
TraesCS3A01G165200.1	Wheat	nucleus	17.77	26.88
EES02423	Sorghum	nucleus	18.11	26.85
Zm00001d047421_P001	Maize	nucleus	16.61	26.67
EER92218	Sorghum	nucleus	16.45	26.26
Os01t0249900-01	Rice	plastid	13.46	25.96
Zm00001d029287_P001	Maize	nucleus	16.45	25.85
GSMUA_Achr10P...	Banana	mitochondrion	17.61	25.06
Os03t0370250-01	Rice	cytosol	17.11	24.94
CDY52323	Canola	nucleus	6.48	23.08
CDY27657	Canola	nucleus	9.8	19.41
CDY01140	Canola	nucleus	8.64	18.84
CDX99698	Canola	nucleus	9.63	18.83
CDY32382	Canola	nucleus	8.8	18.79
CDY18747	Canola	nucleus	11.13	18.77
CDX89436	Canola	nucleus	10.96	18.75
CDY07275	Canola	nucleus	11.13	18.72
CDX97966	Canola	nucleus	10.13	18.6
CDX92682	Canola	nucleus	11.3	18.38
CDY61958	Canola	nucleus	10.47	17.36
CDY11061	Canola	nucleus	10.47	17.26
CDY49787	Canola	nucleus	10.47	16.98
CDY12911	Canola	nucleus	5.32	16.58
CDX94469	Canola	nucleus	3.65	16.3
CDY68087	Canola	nucleus	8.31	16.23
CDY26346	Canola	nucleus	10.63	15.53

Protein Annotations

MapMan:15.5.28	Gene3D:3.40.140.10	MapMan:6.1.4.2	GO:A0A078DFV3	InterPro:APOBEC/CMP_deaminase_Zn-bd	EnsemblPlants:CDX86188
ProteinID:CDX86188	ProteinID:CDX86188.1	InterPro:CMP_dCMP_dom	ncoils:Coil	InterPro:Cytidine_deaminase-like	InterPro:GEBP
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00144257001
InterPro:IPR002125	PFAM:PF00383	PFAM:PF04504	ScanProsite:PS00903	PFscan:PS51747	PANTHER:PTHR31662
PANTHER:PTHR31662:SF6	SUPFAM:SSF53927	UniParc:UPI0004EF23F5	SEG:seg	:	:

Description

BnaA06g29050D

Coordinates

chrLK031845:-:234627..238227

Molecular Weight (calculated)

65239.5 Da

IEP (calculated)

4.634

GRAVY (calculated)

-0.451

Length

602 amino acids

Sequence
(BLAST)

001: MEYVCVVEAK DGTISVATAF AGHQQAVQDS DHKFLTQAVE EAYKGVDCGD GGPFGAVIVH KNEVVASCHN MVLKYTDPTA HAEVTAIREA CKKLNQIELS
101: ECEIYASCEP CPMCFGAIHL SRLKRLVYGA KAEAAIAIGF DDFIADALRG TGVYQKSNLE IKKADGNGAA IAEQVFQNTK EKFQEEEEMS PSDEREAVFS
201: LESPELEEDG SGGGGGGGAG GETDSDEEAV IPEPNAPDED DDHEYEDLNS PLVSAAAKSS SAATDTVTVA LPAGSAVPVS SIPADSDPKW HRTTEIVHLR
301: PPPLDDSRRL FQRLWTDEDE IELLRGFLDY VATHRGTSSH PPDTAPFYEQ IKSKLQLEFN KNQLVEKLRR LKKKYRNVMS KFSSGKEVVF KSSHDQATFD
401: ISRKIWNQTG KIIGFEDNNV MEFEETNGNN AHVEVDSENV LEKKGTVSSG SRKRPRSRIG KIDEDKAVSL SDGPVPSVNL NENVSAFGEF GDGRNLGGLI
501: EETVKSCVSP LIKEMMNGTT GMMMAAVGGF PGGGGAHAMG VLSPMLMPSV NPLGFGGGGG VGDERWRRQQ ILELEVYSRR LELVQEQIRA TVNELKTMPS
601: GG

Best Arabidopsis Sequence Match ( AT5G28040.2 )
(BLAST)

001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG

Arabidopsis Description

Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.