Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G163600.1 | Wheat | nucleus | 96.83 | 96.83 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 91.93 | 91.67 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 90.78 | 90.52 |
| Zm00001d047421_P001 | Maize | nucleus | 58.5 | 54.13 |
| EER92218 | Sorghum | nucleus | 56.77 | 52.25 |
| Zm00001d029287_P001 | Maize | nucleus | 55.33 | 50.13 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 54.18 | 49.87 |
| Os03t0370250-01 | Rice | cytosol | 54.76 | 46.0 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 6.92 | 38.71 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 35.45 | 32.71 |
| KRG92750 | Soybean | nucleus | 31.41 | 30.88 |
| KRH34055 | Soybean | nucleus | 31.41 | 29.3 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 34.87 | 28.07 |
| CDY21105 | Canola | nucleus | 27.95 | 27.25 |
| CDY00009 | Canola | nucleus | 30.26 | 26.65 |
| PGSC0003DMT400009206 | Potato | nucleus | 31.99 | 26.43 |
| KRH68705 | Soybean | nucleus | 30.55 | 26.17 |
| KRG96940 | Soybean | nucleus | 30.26 | 25.99 |
| Solyc02g083750.1.1 | Tomato | nucleus | 30.84 | 25.42 |
| CDX80681 | Canola | nucleus | 29.39 | 24.82 |
| Bra009986.1-P | Field mustard | nucleus | 29.39 | 24.64 |
| PGSC0003DMT400057863 | Potato | nucleus | 31.41 | 24.38 |
| CDY30023 | Canola | nucleus | 28.24 | 24.32 |
| AT5G28040.2 | Thale cress | nucleus | 29.68 | 24.12 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.11 | 23.88 |
| CDY50767 | Canola | nucleus | 27.67 | 23.7 |
| CDY41910 | Canola | nucleus | 27.95 | 22.82 |
| Bra040416.1-P | Field mustard | nucleus | 27.95 | 22.82 |
| Solyc01g097890.2.1 | Tomato | nucleus | 29.39 | 22.52 |
| AT3G04930.1 | Thale cress | nucleus | 29.39 | 22.37 |
| KRG92748 | Soybean | cytosol | 22.48 | 21.85 |
| Bra040116.1-P | Field mustard | nucleus | 23.05 | 21.56 |
| KRH34056 | Soybean | nucleus | 21.04 | 19.47 |
| CDY68986 | Canola | nucleus | 18.44 | 18.88 |
| Bra036116.1-P | Field mustard | nucleus | 18.16 | 17.6 |
| CDX86188 | Canola | cytosol | 29.68 | 17.11 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 19.02 | 13.5 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G159600.1 | EnsemblPlantsGene:TraesCS4B01G159600 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF2 |
| PFAM:PF04504 | SEG:seg | MapMan:15.5.28 | : | : | : |
Description
No Description!
Coordinates
chr4B:-:310165031..310166241
Molecular Weight (calculated)
38070.7 Da
IEP (calculated)
5.182
GRAVY (calculated)
-0.527
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPMVDDPSA AGAAASSSFP DADAYGNGDS EDIDFPVDPI PNPPFSSAPV AAPASATATV GERRPLFQRL WTEEDEIVIL RAFAEFTAQR GTAFASHQYD
101: TEPFYEEMRR RLQLDFSKSQ LAEKLRRLKR KYRNCVERLR CSGNTFSFRS PHEQAVFEIA RNIWRPSSDK HGRDPNAADS EDDATITATN AAANGDAKSP
201: SSSKAHRRGR RRRTADLAAD ASEAPQPYTS GPMPVKTEDS LPAFFPHVSM DGAEPVVAPV VNTESSVLTP LFKEMVRAML GIGGCPSPLG LGAKVPEQPS
301: AILGIPMEGE KWRQQRILEL EVYLRRIDLL QDEVKSALEE LKSTPPS
101: TEPFYEEMRR RLQLDFSKSQ LAEKLRRLKR KYRNCVERLR CSGNTFSFRS PHEQAVFEIA RNIWRPSSDK HGRDPNAADS EDDATITATN AAANGDAKSP
201: SSSKAHRRGR RRRTADLAAD ASEAPQPYTS GPMPVKTEDS LPAFFPHVSM DGAEPVVAPV VNTESSVLTP LFKEMVRAML GIGGCPSPLG LGAKVPEQPS
301: AILGIPMEGE KWRQQRILEL EVYLRRIDLL QDEVKSALEE LKSTPPS
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.