Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g097890.2.1 | Tomato | nucleus | 45.41 | 44.81 |
| PGSC0003DMT400009206 | Potato | nucleus | 38.7 | 41.19 |
| KRG96940 | Soybean | nucleus | 34.23 | 37.87 |
| KRG92750 | Soybean | nucleus | 29.53 | 37.39 |
| KRH34055 | Soybean | nucleus | 30.65 | 36.83 |
| KRH68705 | Soybean | nucleus | 33.33 | 36.79 |
| HORVU5Hr1G051570.1 | Barley | plastid | 25.06 | 32.56 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 27.52 | 32.54 |
| Zm00001d006945_P001 | Maize | nucleus | 26.85 | 32.52 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 27.29 | 32.28 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 27.07 | 32.1 |
| EER97613 | Sorghum | nucleus | 26.4 | 31.47 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 24.38 | 31.41 |
| Zm00001d022266_P001 | Maize | nucleus | 26.17 | 31.28 |
| Os07t0636100-01 | Rice | nucleus | 17.45 | 31.08 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 23.94 | 30.84 |
| HORVU2Hr1G027390.1 | Barley | plastid | 25.73 | 30.75 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 23.94 | 30.75 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 25.73 | 30.59 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 23.71 | 30.46 |
| EER92218 | Sorghum | nucleus | 24.61 | 29.18 |
| Zm00001d047421_P001 | Maize | nucleus | 24.38 | 29.07 |
| EES02686 | Sorghum | nucleus | 25.95 | 28.71 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 25.5 | 28.64 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 25.73 | 28.47 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 25.06 | 28.14 |
| EES02423 | Sorghum | nucleus | 25.5 | 28.08 |
| Zm00001d029287_P001 | Maize | nucleus | 23.94 | 27.94 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 26.4 | 27.38 |
| Zm00001d040254_P001 | Maize | nucleus | 23.94 | 26.82 |
| Os03t0370250-01 | Rice | cytosol | 23.71 | 25.67 |
| Os01t0249900-01 | Rice | plastid | 17.67 | 25.32 |
| GSMUA_Achr10P... | Banana | mitochondrion | 22.37 | 23.64 |
| PGSC0003DMT400079215 | Potato | nucleus | 13.42 | 15.04 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057863 | EnsemblPlantsGene:PGSC0003DMG400022471 | EntrezGene:102600805 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 |
| PANTHER:PTHR31662:SF6 | PFAM:PF04504 | PGSC:PGSC0003DMG400022471 | RefSeq:XP_006347802.1 | SEG:seg | UniParc:UPI00029526C4 |
| UniProt:M1C1T3 | MapMan:15.5.28 | : | : | : | : |
Description
Transcription regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400022471]
Coordinates
chr1:-:75540806..75542559
Molecular Weight (calculated)
48054.8 Da
IEP (calculated)
5.688
GRAVY (calculated)
-0.391
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSVPNRHHQ ASYDNLDYEV DMELEGDEDS TSSPSIAGEV TIAVAGVSTG DSGAGMMNPG KRPRIDDFAI PVILPGAVKK PSAAFDESRK LFQRLWTDED
101: EIELLRGFLE YTTQRGLNTS SPQHHYDTTA FYEQIKSKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ VTFDISHRIW STGGSYARSS
201: PGGSVGFSAP PLEDGGVGLG LEDDEDVNPN PNPDSIVLYH SPKFNLNSNP NGIAIKTPRS QKRSPVPLEA VKVEHQPYQP PGVRINVQMP ATNSNPVAAA
301: PAAPPVSGVA APQVSGVAAP PVAGVAASAP TTVAASVPNL IEETVRNCVS PIFKELVNNV ANLNGSARGF GFGFGGMGMS PIPLGLGQGL GLGLGFGGGA
401: MSMEMMGDEK WRKQQMLELE VYSKRLELVQ DQVKAQLEEL RSMGSNN
101: EIELLRGFLE YTTQRGLNTS SPQHHYDTTA FYEQIKSKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ VTFDISHRIW STGGSYARSS
201: PGGSVGFSAP PLEDGGVGLG LEDDEDVNPN PNPDSIVLYH SPKFNLNSNP NGIAIKTPRS QKRSPVPLEA VKVEHQPYQP PGVRINVQMP ATNSNPVAAA
301: PAAPPVSGVA APQVSGVAAP PVAGVAASAP TTVAASVPNL IEETVRNCVS PIFKELVNNV ANLNGSARGF GFGFGGMGMS PIPLGLGQGL GLGLGFGGGA
401: MSMEMMGDEK WRKQQMLELE VYSKRLELVQ DQVKAQLEEL RSMGSNN
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.