Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G138100.1 | Wheat | nucleus | 95.4 | 95.4 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 92.82 | 93.08 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 90.52 | 90.78 |
| Zm00001d047421_P001 | Maize | nucleus | 58.05 | 53.87 |
| EER92218 | Sorghum | nucleus | 55.46 | 51.19 |
| Zm00001d029287_P001 | Maize | nucleus | 55.46 | 50.39 |
| HORVU2Hr1G027390.1 | Barley | plastid | 50.86 | 47.33 |
| Os03t0370250-01 | Rice | cytosol | 54.02 | 45.52 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 6.9 | 38.71 |
| HORVU5Hr1G051570.1 | Barley | plastid | 33.05 | 33.43 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 35.63 | 30.69 |
| KRG92750 | Soybean | nucleus | 30.46 | 30.03 |
| KRH34055 | Soybean | nucleus | 31.32 | 29.3 |
| CDY21105 | Canola | nucleus | 27.59 | 26.97 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 33.33 | 26.91 |
| KRH68705 | Soybean | nucleus | 29.31 | 25.19 |
| Solyc02g083750.1.1 | Tomato | nucleus | 30.46 | 25.18 |
| CDY00009 | Canola | nucleus | 28.45 | 25.13 |
| PGSC0003DMT400009206 | Potato | nucleus | 30.17 | 25.0 |
| KRG96940 | Soybean | nucleus | 29.02 | 25.0 |
| Bra009986.1-P | Field mustard | nucleus | 29.6 | 24.88 |
| CDX80681 | Canola | nucleus | 29.31 | 24.82 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.89 | 24.59 |
| CDY30023 | Canola | nucleus | 27.87 | 24.07 |
| PGSC0003DMT400057863 | Potato | nucleus | 30.46 | 23.71 |
| AT5G28040.2 | Thale cress | nucleus | 27.87 | 22.72 |
| Solyc01g097890.2.1 | Tomato | nucleus | 29.31 | 22.52 |
| CDY50767 | Canola | nucleus | 25.86 | 22.22 |
| CDY41910 | Canola | nucleus | 27.01 | 22.12 |
| AT3G04930.1 | Thale cress | nucleus | 28.45 | 21.71 |
| KRG92748 | Soybean | cytosol | 22.13 | 21.57 |
| Bra040416.1-P | Field mustard | nucleus | 26.15 | 21.41 |
| Bra040116.1-P | Field mustard | nucleus | 22.7 | 21.29 |
| KRH34056 | Soybean | nucleus | 20.69 | 19.2 |
| CDY68986 | Canola | nucleus | 17.24 | 17.7 |
| Bra036116.1-P | Field mustard | nucleus | 17.24 | 16.76 |
| CDX86188 | Canola | cytosol | 28.74 | 16.61 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 18.97 | 13.47 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G045570.1 | EnsemblPlantsGene:HORVU4Hr1G045570 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF2 |
| PFAM:PF04504 | SEG:seg | UniParc:UPI00029519D7 | UniProt:M0UG34 | MapMan:15.5.28 | : |
Description
No Description!
Coordinates
chrchr4H:+:363512126..363513775
Molecular Weight (calculated)
38207.8 Da
IEP (calculated)
5.334
GRAVY (calculated)
-0.520
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPMVDDHSA AGAAASSSFP DADAYGNGDS EDIDFPVDPI PNPPFSSSAS VVAPASASAT VGERRPLFQR LWTEEDEIVI LRAFAEFTAQ RGTAFASHQY
101: DTEPFYEEMR RRLQLDFSKS QLAEKLRRLK RKYRNCVERL RCSGNTFSFR SPHEQAVFEI ARNIWRPSSD KHGRDPSAAD SEDDATITAT NAAANGDAKS
201: PSSSRAHRRG RRRRTADLAA DASEAPPPYK PGSMPVKTED SLPAFFPQVS MDGAEPVVAP VVNTESSFLT PLFKEMVRAM LGIGGCPSPL GLGAKVPEQP
301: SAVLGIPMEG EKWRQQRILE LEVYLRRIDL LQDEVKSALE ELKSAPPT
101: DTEPFYEEMR RRLQLDFSKS QLAEKLRRLK RKYRNCVERL RCSGNTFSFR SPHEQAVFEI ARNIWRPSSD KHGRDPSAAD SEDDATITAT NAAANGDAKS
201: PSSSRAHRRG RRRRTADLAA DASEAPPPYK PGSMPVKTED SLPAFFPQVS MDGAEPVVAP VVNTESSFLT PLFKEMVRAM LGIGGCPSPL GLGAKVPEQP
301: SAVLGIPMEG EKWRQQRILE LEVYLRRIDL LQDEVKSALE ELKSAPPT
001: MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
Arabidopsis Description
Probable transcription factor At3g04930 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.