CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68705	Soybean	nucleus	81.44	81.23
KRG92750	Soybean	nucleus	44.06	50.42
KRH34055	Soybean	nucleus	41.83	45.43
PGSC0003DMT400009206	Potato	nucleus	40.35	38.81
Solyc02g083750.1.1	Tomato	nucleus	40.35	38.72
PGSC0003DMT400057863	Potato	nucleus	37.87	34.23
Solyc01g097890.2.1	Tomato	nucleus	35.64	31.79
HORVU5Hr1G051570.1	Barley	plastid	26.24	30.81
TraesCS3B01G200500.1	Wheat	nucleus	28.47	30.59
EES02686	Sorghum	nucleus	30.45	30.45
TraesCS4B01G159600.1	Wheat	nucleus	25.99	30.26
EES02423	Sorghum	nucleus	30.2	30.05
TraesCS4D01G163600.1	Wheat	nucleus	25.74	29.97
HORVU2Hr1G027390.1	Barley	plastid	27.72	29.95
Zm00001d022266_P001	Maize	nucleus	27.72	29.95
EER97613	Sorghum	nucleus	27.72	29.87
TraesCS3D01G176400.1	Wheat	nucleus	29.21	29.65
TraesCS3A01G165200.1	Wheat	nucleus	29.21	29.65
TraesCS4A01G138100.1	Wheat	nucleus	25.5	29.6
TraesCS2A01G151700.1	Wheat	nucleus	27.48	29.37
Zm00001d040254_P001	Maize	nucleus	28.96	29.32
TraesCS2D01G156800.1	Wheat	nucleus	27.23	29.1
Os07t0636100-01	Rice	nucleus	18.07	29.08
HORVU4Hr1G045570.1	Barley	nucleus	25.0	29.02
GSMUA_Achr8P22220_001	Banana	nucleus	30.94	29.0
Zm00001d006945_P001	Maize	nucleus	26.49	29.0
KRG92748	Soybean	cytosol	25.5	28.85
HORVU3Hr1G034150.3	Barley	nucleus	28.47	28.47
TraesCS2B01G176900.1	Wheat	nucleus	26.24	28.12
EER92218	Sorghum	nucleus	25.99	27.85
Zm00001d047421_P001	Maize	nucleus	25.74	27.73
KRH34056	Soybean	nucleus	25.5	27.47
Os01t0249900-01	Rice	plastid	20.79	26.92
Zm00001d029287_P001	Maize	nucleus	24.01	25.33
GSMUA_Achr10P...	Banana	mitochondrion	25.5	24.35
Os03t0370250-01	Rice	cytosol	24.75	24.21
KRH10688	Soybean	nucleus	18.81	17.39
KRH57853	Soybean	nucleus	15.1	15.76
KRH21647	Soybean	nucleus	16.83	15.18

Protein Annotations

EMBL:ACUP02012169	EnsemblPlants:KRG96940	EnsemblPlantsGene:GLYMA_19G242600	EntrezGene:100779712	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	ncoils:Coil
PANTHER:PTHR31662	PANTHER:PTHR31662:SF6	PFAM:PF04504	ProteinID:KRG96940	ProteinID:KRG96940.1	SEG:seg
UniParc:UPI000233EB84	UniProt:I1NC70	MapMan:15.5.28	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:49030903..49032893

Molecular Weight (calculated)

44738.8 Da

IEP (calculated)

4.553

GRAVY (calculated)

-0.805

Length

404 amino acids

Sequence
(BLAST)

001: MASQQHDAVF REEDMDDDDD ESQEDGDYEE EDDDVLADDE ENEPSPSTAL AVTVAVPGSS VSNGGAAPIS TPTATTIVVA DSSDPKRRRL EPVEEKKPPP
101: TPDDSRRLFQ RLWTDEDEIE LLQGFLDYTS QRGSSHHNDT ALFYDQIKSK LQLDFNKNQL VEKIRRLKKK YRNVLNKIGS GKEFSFKSAH DQATFEISRK
201: IWSNVTPIGD NSLDDDEINP NRSPNPNLNF SPIILKNEMI FRNPAEKKTP KRSRPRSAVK IEPNDGSASN RDHDCISNAT PTATATAAAT NTTPTAATTN
301: DNCNSGYGNN IPSMIEETVR SCLSPVLKEL MAGAMGGGAF GARGFSLNLN PMPLMNWSFG GGEMVDEKWR KQQILELEVY SKRLELVQDQ IKAAMEELRS
401: HGGG

Best Arabidopsis Sequence Match ( AT5G28040.2 )
(BLAST)

001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG

Arabidopsis Description

Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.