Factsheet for HORVU2Hr1G027390.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G151700.1	Wheat	nucleus	71.93	71.16
TraesCS2D01G156800.1	Wheat	nucleus	70.59	69.84
TraesCS2B01G176900.1	Wheat	nucleus	68.98	68.44
Zm00001d006945_P001	Maize	nucleus	60.96	61.79
Zm00001d022266_P001	Maize	nucleus	61.5	61.5
EER97613	Sorghum	nucleus	59.09	58.93
HORVU4Hr1G045570.1	Barley	nucleus	47.33	50.86
Os07t0636100-01	Rice	nucleus	33.16	49.4
VIT_14s0030g01600.t01	Wine grape	cytosol, mitochondrion	6.68	40.32
HORVU5Hr1G051570.1	Barley	plastid	34.76	37.79
HORVU3Hr1G034150.3	Barley	nucleus	34.49	31.93
CDY21105	Canola	nucleus	26.47	27.81
KRG96940	Soybean	nucleus	29.95	27.72
KRH34055	Soybean	nucleus	27.54	27.69
KRG92750	Soybean	nucleus	25.94	27.48
GSMUA_Achr8P22220_001	Banana	nucleus	31.02	26.91
CDY00009	Canola	nucleus	28.34	26.9
KRH68705	Soybean	nucleus	28.88	26.67
Solyc02g083750.1.1	Tomato	nucleus	29.68	26.37
CDX80681	Canola	nucleus	28.88	26.28
PGSC0003DMT400009206	Potato	nucleus	29.14	25.95
PGSC0003DMT400057863	Potato	nucleus	30.75	25.73
GSMUA_Achr10P...	Banana	mitochondrion	28.61	25.3
CDY50767	Canola	nucleus	27.27	25.19
CDY41910	Canola	nucleus	28.61	25.18
Solyc01g097890.2.1	Tomato	nucleus	30.48	25.17
Bra009986.1-P	Field mustard	nucleus	27.54	24.88
CDY30023	Canola	nucleus	26.74	24.81
AT5G28040.2	Thale cress	nucleus	27.54	24.12
Bra040416.1-P	Field mustard	nucleus	27.27	24.0
KRG92748	Soybean	cytosol	22.73	23.81
AT3G04930.1	Thale cress	nucleus	27.27	22.37
Bra040116.1-P	Field mustard	nucleus	21.39	21.56
Bra036116.1-P	Field mustard	nucleus	19.52	20.39
KRH34056	Soybean	nucleus	20.05	20.0
CDY68986	Canola	nucleus	16.58	18.29
CDX86188	Canola	cytosol	27.81	17.28
HORVU5Hr1G067630.1	Barley	nucleus	18.45	14.08

Protein Annotations

EnsemblPlants:HORVU2Hr1G027390.1	EnsemblPlantsGene:HORVU2Hr1G027390	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	ncoils:Coil	PANTHER:PTHR31662	PANTHER:PTHR31662:SF2
PFAM:PF04504	SEG:seg	UniParc:UPI000B488CEF	UniProt:A0A287HHB6	MapMan:15.5.28	:

Description

No Description!

Coordinates

chrchr2H:-:90168742..90170689

Molecular Weight (calculated)

40799.8 Da

IEP (calculated)

10.515

GRAVY (calculated)

-0.476

Length

374 amino acids

Sequence
(BLAST)

001: MDPLPPSPLS LSPMRTATTT PRTATSPAPR SSNRPIRVSP TPXXSATALL PAGGSGGQAS SGGERRPLFQ RLWTEEDEIV ILRGFAEFTA ARGTAFASHQ
101: YDTDPFYEDM RRRLQLDFSK SQLVEKLRRL KRKYRNCVSR LRGSGAAFSF RSPHEQAIFE IARNIWRPTN KHGRDPSADS DDEEAVVAAA VVAPTAAPAN
201: TSPNGEVKSP SGRQRRRRRS VESAAPTAPT PAPVPVPATI LVQPPQQVQV PVSVPVKMDN SLPALPQAPM PVTVTMDGSE PLRFPVMSPQ SGVVDVEKNF
301: LTPLFKEMIH AVVNIGSNPF GVKLPELPNG LPMEGEKWRN QRILELEVYL KRIELLQDQV KATLEELKSS TPRT

Best Arabidopsis Sequence Match ( AT3G04930.1 )
(BLAST)

001: MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI

Arabidopsis Description

Probable transcription factor At3g04930 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.