Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009986.1-P | Field mustard | nucleus | 66.28 | 68.36 |
| CDX80681 | Canola | nucleus | 63.7 | 66.18 |
| AT3G04930.1 | Thale cress | nucleus | 61.36 | 57.46 |
| CDY00009 | Canola | nucleus | 52.69 | 57.11 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 7.73 | 53.23 |
| Bra036116.1-P | Field mustard | nucleus | 40.05 | 47.77 |
| CDX86188 | Canola | cytosol | 61.36 | 43.52 |
| CDY68986 | Canola | nucleus | 31.85 | 40.12 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 24.12 | 29.68 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 25.76 | 29.1 |
| Os07t0636100-01 | Rice | nucleus | 17.1 | 29.08 |
| KRG92748 | Soybean | cytosol | 24.12 | 28.85 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 23.42 | 28.82 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 25.29 | 28.65 |
| Zm00001d022266_P001 | Maize | nucleus | 25.06 | 28.61 |
| Zm00001d040254_P001 | Maize | nucleus | 26.7 | 28.57 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 28.81 | 28.54 |
| Zm00001d006945_P001 | Maize | nucleus | 24.59 | 28.46 |
| EER97613 | Sorghum | nucleus | 24.59 | 28.0 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 22.72 | 27.87 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 22.48 | 27.59 |
| HORVU2Hr1G027390.1 | Barley | plastid | 24.12 | 27.54 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 24.36 | 27.51 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 24.12 | 27.39 |
| EER92218 | Sorghum | nucleus | 24.12 | 27.32 |
| EES02686 | Sorghum | nucleus | 25.76 | 27.23 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 25.06 | 26.88 |
| EES02423 | Sorghum | nucleus | 25.53 | 26.85 |
| HORVU5Hr1G051570.1 | Barley | plastid | 21.55 | 26.74 |
| KRH34056 | Soybean | nucleus | 23.42 | 26.67 |
| Zm00001d047421_P001 | Maize | nucleus | 22.95 | 26.13 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 24.36 | 26.13 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 24.59 | 25.99 |
| Zm00001d029287_P001 | Maize | nucleus | 23.18 | 25.85 |
| Os01t0249900-01 | Rice | plastid | 18.74 | 25.64 |
| Os03t0370250-01 | Rice | cytosol | 24.12 | 24.94 |
| GSMUA_Achr10P... | Banana | mitochondrion | 23.89 | 24.11 |
| AT1G44810.1 | Thale cress | nucleus | 13.82 | 19.93 |
| AT4G00130.1 | Thale cress | mitochondrion | 8.9 | 19.59 |
| AT4G00390.1 | Thale cress | nucleus | 16.63 | 19.51 |
| AT2G01370.1 | Thale cress | mitochondrion | 11.01 | 18.65 |
| AT1G61730.1 | Thale cress | nucleus | 16.39 | 18.62 |
| AT4G01260.1 | Thale cress | nucleus | 14.05 | 18.46 |
| AT4G25210.1 | Thale cress | nucleus | 14.99 | 17.39 |
| AT1G11510.1 | Thale cress | nucleus | 14.05 | 17.05 |
| AT4G00610.1 | Thale cress | plastid | 11.71 | 15.24 |
| AT4G00250.1 | Thale cress | nucleus | 11.24 | 15.05 |
| AT1G66420.1 | Thale cress | nucleus | 9.84 | 14.89 |
| AT4G00238.1 | Thale cress | nucleus | 11.94 | 14.78 |
| AT1G55950.1 | Thale cress | mitochondrion | 7.26 | 14.16 |
Protein Annotations
| MapMan:15.5.28 | EntrezGene:832874 | EMBL:AC007627 | ProteinID:AED93767.1 | EMBL:AK117998 | ProteinID:ANM70113.1 |
| ArrayExpress:AT5G28040 | EnsemblPlantsGene:AT5G28040 | RefSeq:AT5G28040 | TAIR:AT5G28040 | RefSeq:AT5G28040-TAIR-G | EnsemblPlants:AT5G28040.2 |
| EMBL:BT005356 | ncoils:Coil | UniProt:F4K5T4 | InterPro:GEBP | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | RefSeq:NP_001318667.1 |
| RefSeq:NP_198156.1 | PFAM:PF04504 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF6 | UniParc:UPI000016261F | SEG:seg |
Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
Coordinates
chr5:-:10037037..10039286
Molecular Weight (calculated)
46908.9 Da
IEP (calculated)
4.642
GRAVY (calculated)
-0.657
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.