Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80681 | Canola | nucleus | 89.13 | 89.78 |
| AT5G28040.2 | Thale cress | nucleus | 68.36 | 66.28 |
| Bra040416.1-P | Field mustard | nucleus | 57.0 | 55.53 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 7.97 | 53.23 |
| Bra036116.1-P | Field mustard | nucleus | 43.24 | 50.0 |
| Bra040116.1-P | Field mustard | nucleus | 42.27 | 47.17 |
| Os07t0636100-01 | Rice | nucleus | 18.6 | 30.68 |
| EER97613 | Sorghum | nucleus | 27.05 | 29.87 |
| Zm00001d040254_P001 | Maize | nucleus | 28.74 | 29.82 |
| Zm00001d022266_P001 | Maize | nucleus | 26.81 | 29.68 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 24.88 | 29.6 |
| Zm00001d006945_P001 | Maize | nucleus | 26.33 | 29.54 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 24.64 | 29.39 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 26.81 | 29.37 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 24.64 | 29.31 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 26.33 | 28.84 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 24.15 | 28.82 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 25.85 | 28.46 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 25.85 | 28.38 |
| KRG92748 | Soybean | cytosol | 24.4 | 28.29 |
| EES02686 | Sorghum | nucleus | 27.54 | 28.22 |
| EES02423 | Sorghum | nucleus | 27.29 | 27.83 |
| HORVU5Hr1G051570.1 | Barley | plastid | 22.95 | 27.62 |
| HORVU2Hr1G027390.1 | Barley | plastid | 24.88 | 27.54 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 26.33 | 27.39 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 28.5 | 27.38 |
| EER92218 | Sorghum | nucleus | 24.88 | 27.32 |
| KRH34056 | Soybean | nucleus | 24.64 | 27.2 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 26.09 | 27.14 |
| Zm00001d047421_P001 | Maize | nucleus | 24.15 | 26.67 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 25.85 | 26.49 |
| Zm00001d029287_P001 | Maize | nucleus | 23.67 | 25.59 |
| Os01t0249900-01 | Rice | plastid | 19.08 | 25.32 |
| GSMUA_Achr10P... | Banana | mitochondrion | 25.36 | 24.82 |
| Os03t0370250-01 | Rice | cytosol | 24.64 | 24.7 |
| Bra025445.1-P | Field mustard | nucleus | 15.94 | 21.5 |
| Bra013873.1-P | Field mustard | nucleus | 16.91 | 19.55 |
| Bra031402.1-P | Field mustard | nucleus | 15.46 | 19.28 |
| Bra019183.1-P | Field mustard | nucleus | 16.18 | 18.31 |
| Bra019847.1-P | Field mustard | nucleus | 15.46 | 17.98 |
| Bra032717.1-P | Field mustard | nucleus | 14.01 | 17.47 |
| Bra034488.1-P | Field mustard | nucleus | 13.53 | 17.39 |
| Bra021317.1-P | Field mustard | nucleus | 12.56 | 16.88 |
| Bra027078.1-P | Field mustard | nucleus | 15.46 | 16.84 |
| Bra038583.1-P | Field mustard | nucleus | 14.73 | 14.56 |
Protein Annotations
| EnsemblPlants:Bra009986.1 | EnsemblPlants:Bra009986.1-P | EnsemblPlantsGene:Bra009986 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 |
| PANTHER:PTHR31662:SF6 | PFAM:PF04504 | SEG:seg | UniParc:UPI000253F524 | UniProt:M4D0I8 | MapMan:15.5.28 |
Description
AT5G28040 (E=5e-087) | transcription regulator
Coordinates
chrA06:-:18469313..18470557
Molecular Weight (calculated)
44966.6 Da
IEP (calculated)
4.604
GRAVY (calculated)
-0.587
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSDEREAV FSLESPELEE DGSGGGGGGG AGGETDSDEE AVMPEPNAPD EDDDHEYEDL NSPLVSAAAK SSSAATDTVT VALPAGSAVP VSSIPADSDP
101: KWHRTTEIVH LRPPPLDDSR RLFQRLWTDE DEIELLRGFL DYVATHRGTS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL RRLKKKYRNV MSKFSSGKEV
201: VFKSSHDQAT FDISRKIWNQ TGKIIGFEDN NVMEFEETNG NNAHVEVDSE NVLEKKVTVS SGSRKRPRSR IGKIDEDKAV SLSDGPVPSV NLNENVSAFG
301: EFGDGRNLGG LIEETLKSCV SPLIKEMMNG TTGMMMAAVG GYPGGGGAHA MGVLSPMLMP SVNPLGFGGG GGVGDERWRR QQILELEVYS RRLELVQEQI
401: RATVNELKTM PSGG
101: KWHRTTEIVH LRPPPLDDSR RLFQRLWTDE DEIELLRGFL DYVATHRGTS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL RRLKKKYRNV MSKFSSGKEV
201: VFKSSHDQAT FDISRKIWNQ TGKIIGFEDN NVMEFEETNG NNAHVEVDSE NVLEKKVTVS SGSRKRPRSR IGKIDEDKAV SLSDGPVPSV NLNENVSAFG
301: EFGDGRNLGG LIEETLKSCV SPLIKEMMNG TTGMMMAAVG GYPGGGGAHA MGVLSPMLMP SVNPLGFGGG GGVGDERWRR QQILELEVYS RRLELVQEQI
401: RATVNELKTM PSGG
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.