Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G176900.1 | Wheat | nucleus | 92.06 | 92.31 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 84.92 | 84.92 |
| HORVU2Hr1G027390.1 | Barley | plastid | 71.16 | 71.93 |
| Zm00001d022266_P001 | Maize | nucleus | 68.52 | 69.25 |
| EER97613 | Sorghum | nucleus | 65.61 | 66.13 |
| Zm00001d006945_P001 | Maize | nucleus | 64.55 | 66.12 |
| Os07t0636100-01 | Rice | nucleus | 36.24 | 54.58 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 48.15 | 52.3 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 6.61 | 40.32 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 34.66 | 32.91 |
| CDY21105 | Canola | nucleus | 28.31 | 30.06 |
| KRG92750 | Soybean | nucleus | 26.45 | 28.33 |
| KRH34055 | Soybean | nucleus | 27.51 | 27.96 |
| KRH68705 | Soybean | nucleus | 29.63 | 27.65 |
| KRG96940 | Soybean | nucleus | 29.37 | 27.48 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 31.22 | 27.38 |
| PGSC0003DMT400057863 | Potato | nucleus | 32.28 | 27.29 |
| CDX80681 | Canola | nucleus | 29.63 | 27.25 |
| Solyc02g083750.1.1 | Tomato | nucleus | 30.16 | 27.08 |
| CDY30023 | Canola | nucleus | 28.84 | 27.05 |
| PGSC0003DMT400009206 | Potato | nucleus | 29.89 | 26.9 |
| CDY00009 | Canola | nucleus | 28.04 | 26.9 |
| Bra009986.1-P | Field mustard | nucleus | 29.37 | 26.81 |
| CDY41910 | Canola | nucleus | 29.89 | 26.59 |
| CDY50767 | Canola | nucleus | 27.78 | 25.93 |
| AT5G28040.2 | Thale cress | nucleus | 29.1 | 25.76 |
| Solyc01g097890.2.1 | Tomato | nucleus | 30.42 | 25.39 |
| GSMUA_Achr10P... | Banana | mitochondrion | 28.04 | 25.06 |
| AT3G04930.1 | Thale cress | nucleus | 29.63 | 24.56 |
| Bra040416.1-P | Field mustard | nucleus | 27.51 | 24.47 |
| Bra040116.1-P | Field mustard | nucleus | 23.55 | 23.99 |
| KRG92748 | Soybean | cytosol | 21.96 | 23.25 |
| KRH34056 | Soybean | nucleus | 20.37 | 20.53 |
| Bra036116.1-P | Field mustard | nucleus | 19.05 | 20.11 |
| CDX86188 | Canola | cytosol | 28.84 | 18.11 |
| CDY68986 | Canola | nucleus | 16.14 | 17.99 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 16.4 | 12.65 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G151700.1 | EnsemblPlantsGene:TraesCS2A01G151700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF2 |
| PFAM:PF04504 | SEG:seg | MapMan:15.5.28 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:99787625..99788761
Molecular Weight (calculated)
41234.8 Da
IEP (calculated)
5.529
GRAVY (calculated)
-0.456
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPAGDGSSA AFAALSFTDA DGDDYSEDGD FTGAPFLEPP DPSLPDPTSS SATALLPAGG SGGQASSGGE RRPLFQRLWT EEDEIVILRG FAEFTAARGT
101: AFASHQYDTD PFYEDMRRRL QLDFSKSQLV EKLRRLKRKY RNCVSRLRGS GAAFSFRSPH EQAIFEIARN IWRPTNKHGR DPSADSDDEE AVVAAAAVAA
201: TPVPANTSPN GEVKSPSGRQ RRRRRSVESA APSAPAAVPA TILVQPPQPV QVQVPVSVPV KMDDSLPALP QAPMPVTVTM EGSEPLRFPV MSPQSGIVDV
301: EKNFLTPMFK EMIHAVINMG SSPFGMKLPE PPHGLPMEGE KWRNQRILEL EVYLKRIELL QDQVKATLEE LKSSTPRT
101: AFASHQYDTD PFYEDMRRRL QLDFSKSQLV EKLRRLKRKY RNCVSRLRGS GAAFSFRSPH EQAIFEIARN IWRPTNKHGR DPSADSDDEE AVVAAAAVAA
201: TPVPANTSPN GEVKSPSGRQ RRRRRSVESA APSAPAAVPA TILVQPPQPV QVQVPVSVPV KMDDSLPALP QAPMPVTVTM EGSEPLRFPV MSPQSGIVDV
301: EKNFLTPMFK EMIHAVINMG SSPFGMKLPE PPHGLPMEGE KWRNQRILEL EVYLKRIELL QDQVKATLEE LKSSTPRT
001: MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGGGF VYNLLY
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGGGF VYNLLY
Arabidopsis Description
Probable transcription factor At3g04930 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.