Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006945_P001 | Maize | nucleus | 81.02 | 82.11 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 70.05 | 69.5 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 69.25 | 68.52 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 68.72 | 67.99 |
| HORVU2Hr1G027390.1 | Barley | plastid | 61.5 | 61.5 |
| Os07t0636100-01 | Rice | nucleus | 36.63 | 54.58 |
| Zm00001d047421_P001 | Maize | nucleus | 46.79 | 46.67 |
| Zm00001d029287_P001 | Maize | nucleus | 45.72 | 44.65 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 6.95 | 41.94 |
| Zm00001d040254_P001 | Maize | nucleus | 35.83 | 33.58 |
| KRG92750 | Soybean | nucleus | 28.88 | 30.59 |
| CDY21105 | Canola | nucleus | 28.61 | 30.06 |
| KRH34055 | Soybean | nucleus | 29.41 | 29.57 |
| CDY00009 | Canola | nucleus | 29.95 | 28.43 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 32.35 | 28.07 |
| CDX80681 | Canola | nucleus | 30.48 | 27.74 |
| KRG96940 | Soybean | nucleus | 29.95 | 27.72 |
| KRH68705 | Soybean | nucleus | 29.95 | 27.65 |
| PGSC0003DMT400009206 | Potato | nucleus | 31.02 | 27.62 |
| CDY50767 | Canola | nucleus | 29.14 | 26.91 |
| Solyc02g083750.1.1 | Tomato | nucleus | 30.21 | 26.84 |
| Bra009986.1-P | Field mustard | nucleus | 29.68 | 26.81 |
| CDY30023 | Canola | nucleus | 28.88 | 26.8 |
| CDY41910 | Canola | nucleus | 30.21 | 26.59 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.68 | 26.24 |
| PGSC0003DMT400057863 | Potato | nucleus | 31.28 | 26.17 |
| KRG92748 | Soybean | cytosol | 24.87 | 26.05 |
| Bra040416.1-P | Field mustard | nucleus | 29.14 | 25.65 |
| AT3G04930.1 | Thale cress | nucleus | 30.75 | 25.22 |
| Solyc01g097890.2.1 | Tomato | nucleus | 30.48 | 25.17 |
| AT5G28040.2 | Thale cress | nucleus | 28.61 | 25.06 |
| Bra040116.1-P | Field mustard | nucleus | 23.8 | 23.99 |
| KRH34056 | Soybean | nucleus | 22.99 | 22.93 |
| Bra036116.1-P | Field mustard | nucleus | 20.59 | 21.51 |
| CDY68986 | Canola | nucleus | 18.72 | 20.65 |
| CDX86188 | Canola | cytosol | 29.68 | 18.44 |
| Zm00001d005865_P001 | Maize | nucleus | 21.39 | 18.26 |
| Zm00001d020688_P001 | Maize | nucleus | 20.32 | 17.76 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 17.38 | 14.25 |
Protein Annotations
| EMBL:BT041652 | EMBL:EU969972 | EMBL:KJ726797 | EnsemblPlants:Zm00001d022266_P001 | EnsemblPlants:Zm00001d022266_T001 | EnsemblPlantsGene:Zm00001d022266 |
| EntrezGene:100273696 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF2 | PFAM:PF04504 |
| ProteinID:ONM59978.1 | SEG:seg | UniParc:UPI00017B7555 | UniProt:B4FX14 | MapMan:15.5.28 | : |
Description
GeBP-transcription factor 12Probable transcription factor
Coordinates
chr7:+:173958884..173960008
Molecular Weight (calculated)
40562.8 Da
IEP (calculated)
5.787
GRAVY (calculated)
-0.597
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPTGDDPPA SAGISFPDAD GGGDSEDGDF AGAHLLDPTD PGLPNPTTSS ATGLPHAIPA AGSGGGPVTS GNGGERRPLF QRLWTEEDEI VILRGFAEFT
101: AARGTAFASH QYDTDPFYED MRRRLQLDFT KSQLVEKLRR LKRKYRNCVS RLRESGATFT FRSPHEQAIF EIARNIWRPT NKHGRDPSAD SDDEDAAAAT
201: QIPANTSPNG EAKSPSSTRQ RRRRRVMEFS PATGAAPATN MLQPPQPVQL SVSVPVKMDD SLPAQPQTPM PVMVAMDGSE PLRLPVVSPQ SGVSDAEKTC
301: LTPLFKEMLR AAINVGANPF GAKLPEPPLG LAMEGEKWRK QRILELEVYL KRIELLQDQA KATLEELKSS TPGS
101: AARGTAFASH QYDTDPFYED MRRRLQLDFT KSQLVEKLRR LKRKYRNCVS RLRESGATFT FRSPHEQAIF EIARNIWRPT NKHGRDPSAD SDDEDAAAAT
201: QIPANTSPNG EAKSPSSTRQ RRRRRVMEFS PATGAAPATN MLQPPQPVQL SVSVPVKMDD SLPAQPQTPM PVMVAMDGSE PLRLPVVSPQ SGVSDAEKTC
301: LTPLFKEMLR AAINVGANPF GAKLPEPPLG LAMEGEKWRK QRILELEVYL KRIELLQDQA KATLEELKSS TPGS
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.