Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057863 | Potato | nucleus | 44.81 | 45.41 |
| KRG92750 | Soybean | nucleus | 31.35 | 40.23 |
| KRH34055 | Soybean | nucleus | 32.67 | 39.78 |
| Solyc02g083750.1.1 | Tomato | nucleus | 36.87 | 39.67 |
| KRH68705 | Soybean | nucleus | 32.45 | 36.3 |
| KRG96940 | Soybean | nucleus | 31.79 | 35.64 |
| Os07t0636100-01 | Rice | nucleus | 17.66 | 31.87 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 25.83 | 31.03 |
| Zm00001d022266_P001 | Maize | nucleus | 25.17 | 30.48 |
| HORVU2Hr1G027390.1 | Barley | plastid | 25.17 | 30.48 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 25.39 | 30.42 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 25.39 | 30.42 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 22.96 | 29.89 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 22.52 | 29.39 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 22.52 | 29.39 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 22.52 | 29.31 |
| EES02686 | Sorghum | nucleus | 26.05 | 29.21 |
| Zm00001d040254_P001 | Maize | nucleus | 25.61 | 29.07 |
| EES02423 | Sorghum | nucleus | 26.05 | 29.06 |
| HORVU5Hr1G051570.1 | Barley | plastid | 21.85 | 28.78 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 23.62 | 28.46 |
| EER97613 | Sorghum | nucleus | 23.4 | 28.27 |
| Zm00001d006945_P001 | Maize | nucleus | 22.96 | 28.18 |
| Zm00001d029287_P001 | Maize | nucleus | 22.96 | 27.15 |
| EER92218 | Sorghum | nucleus | 22.52 | 27.06 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 23.62 | 26.88 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 23.62 | 26.88 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 23.84 | 26.73 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 25.39 | 26.68 |
| Zm00001d047421_P001 | Maize | nucleus | 21.85 | 26.4 |
| Os01t0249900-01 | Rice | plastid | 17.44 | 25.32 |
| Os03t0370250-01 | Rice | cytosol | 22.74 | 24.94 |
| GSMUA_Achr10P... | Banana | mitochondrion | 22.3 | 23.88 |
Protein Annotations
| EnsemblPlants:Solyc01g097890.2.1 | EnsemblPlantsGene:Solyc01g097890.2 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF6 |
| PFAM:PF04504 | SEG:seg | UniParc:UPI00027683DD | UniProt:K4B0H6 | MapMan:15.5.28 | : |
Description
No Description!
Coordinates
chr1:-:88581415..88583129
Molecular Weight (calculated)
48612.7 Da
IEP (calculated)
6.126
GRAVY (calculated)
-0.371
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSVPNRHHQ ASYDNLDYEV DMDVEGDEDS TSSPSIAGEV TIAVAGVSTG DSGAGMMNPG KRPRIDDFAI PVILPGAVKK PSAGFDESRK LFQRLWTDED
101: EIELLRGFLD YTTQRGLNTS SPQHHYDTTA FYEQIKSKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ VTFDISNRIW STGGSYARSS
201: PGGGSVGFSA PPLEDGGVGL GLEEDLDVNP NPNPDSIVLY HSPKFNLNSN PNGIAIKTPR SHKRSPIPLE AVKVEHQPFQ PPGIRINVQM PATNSNPVAA
301: VPAAPPVSGV AAPQVSGVAT PPVGGTAAPL VAGVAAPAPT TGAASVPNLI EETVRNCVSP IFKELLNNVA NLNGSARGFG FGFGGIGMSP MGLGMSPMGL
401: GFGGGAMSME MMRDEKWRKQ QMLELEVYSK RLELVQDQVK AQLEELRSMG SNT
101: EIELLRGFLD YTTQRGLNTS SPQHHYDTTA FYEQIKSKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ VTFDISNRIW STGGSYARSS
201: PGGGSVGFSA PPLEDGGVGL GLEEDLDVNP NPNPDSIVLY HSPKFNLNSN PNGIAIKTPR SHKRSPIPLE AVKVEHQPFQ PPGIRINVQM PATNSNPVAA
301: VPAAPPVSGV AAPQVSGVAT PPVGGTAAPL VAGVAAPAPT TGAASVPNLI EETVRNCVSP IFKELLNNVA NLNGSARGFG FGFGGIGMSP MGLGMSPMGL
401: GFGGGAMSME MMRDEKWRKQ QMLELEVYSK RLELVQDQVK AQLEELRSMG SNT
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.