Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G051570.1 | Barley | plastid | 75.99 | 89.24 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 76.24 | 77.39 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 75.74 | 76.88 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 71.53 | 76.86 |
| EES02686 | Sorghum | nucleus | 54.7 | 54.7 |
| Zm00001d040254_P001 | Maize | nucleus | 51.49 | 52.13 |
| EES02423 | Sorghum | nucleus | 52.23 | 51.97 |
| Os01t0249900-01 | Rice | plastid | 39.36 | 50.96 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 6.68 | 43.55 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 30.69 | 35.63 |
| HORVU2Hr1G027390.1 | Barley | plastid | 31.93 | 34.49 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 33.66 | 31.55 |
| KRG92750 | Soybean | nucleus | 27.48 | 31.44 |
| KRH34055 | Soybean | nucleus | 27.72 | 30.11 |
| CDY00009 | Canola | nucleus | 28.47 | 29.19 |
| CDY21105 | Canola | nucleus | 25.5 | 28.93 |
| KRG96940 | Soybean | nucleus | 28.47 | 28.47 |
| KRH68705 | Soybean | nucleus | 28.47 | 28.4 |
| CDX80681 | Canola | nucleus | 26.98 | 26.52 |
| GSMUA_Achr10P... | Banana | mitochondrion | 27.23 | 26.0 |
| Bra009986.1-P | Field mustard | nucleus | 26.49 | 25.85 |
| PGSC0003DMT400057863 | Potato | nucleus | 28.47 | 25.73 |
| CDY30023 | Canola | nucleus | 25.25 | 25.31 |
| PGSC0003DMT400009206 | Potato | nucleus | 26.24 | 25.24 |
| AT3G04930.1 | Thale cress | nucleus | 28.47 | 25.22 |
| Solyc02g083750.1.1 | Tomato | nucleus | 26.24 | 25.18 |
| CDY41910 | Canola | nucleus | 26.49 | 25.18 |
| CDY50767 | Canola | nucleus | 24.75 | 24.69 |
| AT5G28040.2 | Thale cress | nucleus | 25.99 | 24.59 |
| Solyc01g097890.2.1 | Tomato | nucleus | 26.73 | 23.84 |
| Bra040416.1-P | Field mustard | nucleus | 24.75 | 23.53 |
| KRG92748 | Soybean | cytosol | 19.55 | 22.13 |
| Bra040116.1-P | Field mustard | nucleus | 20.3 | 22.1 |
| CDY68986 | Canola | nucleus | 18.07 | 21.53 |
| Bra036116.1-P | Field mustard | nucleus | 18.32 | 20.67 |
| KRH34056 | Soybean | nucleus | 18.81 | 20.27 |
| CDX86188 | Canola | cytosol | 26.98 | 18.11 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 17.82 | 14.69 |
Protein Annotations
| EMBL:AK373813 | EMBL:AK376405 | EnsemblPlants:HORVU3Hr1G034150.3 | EnsemblPlantsGene:HORVU3Hr1G034150 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 |
| PANTHER:PTHR31662:SF14 | PFAM:PF04504 | SEG:seg | UniParc:UPI000200852B | UniProt:F2ECD8 | MapMan:15.5.28 |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2ECD8]
Coordinates
chrchr3H:-:184596695..184602214
Molecular Weight (calculated)
42365.7 Da
IEP (calculated)
5.320
GRAVY (calculated)
-0.319
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDPASARS SSSAADEDEE GTDSDASNNS HPPAALEAPL PDCPAPPPSA PAAAAAAAVF PEPAGPVSPP PPQGAGVAAA AEDSRRLFQR LWTDEEELLI
101: LRGFLEFTSR RGTAFASHQY DTGPFYEEIR RKLSFDFSKN QLIEKLRRLK KKYRVCATRM ASQGAAFAFK SAHEGAIYDV ARHIWRPAFK RDGAGGDASD
201: EDDINPAEAA AVAAAAAAAA AEPPAAVEEG GGGSASAHTP RGRGSRRGRK RTAQEMEAHA FPATPAPMLT DVAQEPAVAA FESSVPVIAQ PPSVPAAPLP
301: PYPVTTNGPS EAHVRSILSP LLKELISSVA VPGQNVPGLG LGMGFGGADI LGAGLGVAGL SPRVPGDDKW RQQQVLELEV YLKRIELVRE QVMVALQQLR
401: SSQR
101: LRGFLEFTSR RGTAFASHQY DTGPFYEEIR RKLSFDFSKN QLIEKLRRLK KKYRVCATRM ASQGAAFAFK SAHEGAIYDV ARHIWRPAFK RDGAGGDASD
201: EDDINPAEAA AVAAAAAAAA AEPPAAVEEG GGGSASAHTP RGRGSRRGRK RTAQEMEAHA FPATPAPMLT DVAQEPAVAA FESSVPVIAQ PPSVPAAPLP
301: PYPVTTNGPS EAHVRSILSP LLKELISSVA VPGQNVPGLG LGMGFGGADI LGAGLGVAGL SPRVPGDDKW RQQQVLELEV YLKRIELVRE QVMVALQQLR
401: SSQR
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.