Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009206 | Potato | nucleus | 74.82 | 75.0 |
| KRG92750 | Soybean | nucleus | 37.29 | 44.48 |
| KRG96940 | Soybean | nucleus | 38.72 | 40.35 |
| KRH34055 | Soybean | nucleus | 35.63 | 40.32 |
| KRH68705 | Soybean | nucleus | 38.48 | 40.0 |
| Solyc01g097890.2.1 | Tomato | nucleus | 39.67 | 36.87 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 26.13 | 31.7 |
| Zm00001d006945_P001 | Maize | nucleus | 27.55 | 31.44 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 25.89 | 31.32 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 27.79 | 30.95 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 25.42 | 30.84 |
| Os07t0636100-01 | Rice | nucleus | 18.29 | 30.68 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 25.18 | 30.46 |
| EER97613 | Sorghum | nucleus | 27.08 | 30.4 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 27.08 | 30.24 |
| Zm00001d022266_P001 | Maize | nucleus | 26.84 | 30.21 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 27.08 | 30.16 |
| HORVU2Hr1G027390.1 | Barley | plastid | 26.37 | 29.68 |
| HORVU5Hr1G051570.1 | Barley | plastid | 23.52 | 28.78 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 25.42 | 28.46 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 26.84 | 28.39 |
| EES02686 | Sorghum | nucleus | 26.84 | 27.97 |
| Zm00001d040254_P001 | Maize | nucleus | 26.37 | 27.82 |
| EES02423 | Sorghum | nucleus | 26.6 | 27.59 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 27.79 | 27.15 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 25.18 | 26.63 |
| Zm00001d029287_P001 | Maize | nucleus | 24.23 | 26.63 |
| Zm00001d047421_P001 | Maize | nucleus | 23.52 | 26.4 |
| EER92218 | Sorghum | nucleus | 23.52 | 26.26 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 25.18 | 26.24 |
| Os01t0249900-01 | Rice | plastid | 18.53 | 25.0 |
| Os03t0370250-01 | Rice | cytosol | 24.47 | 24.94 |
| GSMUA_Achr10P... | Banana | mitochondrion | 23.75 | 23.64 |
Protein Annotations
| EnsemblPlants:Solyc02g083750.1.1 | EnsemblPlantsGene:Solyc02g083750.1 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF6 |
| PFAM:PF04504 | SEG:seg | UniParc:UPI00027686BF | UniProt:K4BAP3 | MapMan:15.5.28 | : |
Description
No Description!
Coordinates
chr2:-:47039176..47040441
Molecular Weight (calculated)
46856.4 Da
IEP (calculated)
4.461
GRAVY (calculated)
-0.687
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVEDQAVV YNDDDLDDEE DDEESGHPQN EAVVDEDDDV DVDEEEEEED DSTSSPPVPV ANHSVAGEVT IAVVGVPATD SLCIEPKRER INDFGVTPAT
101: MVVEEKKPLV LDDSRKLFQR LWMDEDEIEL LQGFLEYTTQ RGGINSSSHH HHDTGAFYDQ IKNKLQLDFN KNQLVEKLRR LKKKYRTVMS KMGSGKEFVF
201: KSPHDQATFE ISRKIWSNAG PIVVRSSGPP PPPPADDGGF DDEDSHLNLN HANFIDHTPN FNLNPNGFDV KTSKSKKRPR GGEEKPGYIQ QYYHQSSGGG
301: TNVILPPTPV SMAAPQATAT ATAAASIPSL IEETVRSCLS PIFKELFNNL NGSRYSGFGM SLGPSPLVGF GNSLMSCDIN MKTDEKWRKQ QILELEVYSK
401: RLELVQDQIK AQLEELRSMN S
101: MVVEEKKPLV LDDSRKLFQR LWMDEDEIEL LQGFLEYTTQ RGGINSSSHH HHDTGAFYDQ IKNKLQLDFN KNQLVEKLRR LKKKYRTVMS KMGSGKEFVF
201: KSPHDQATFE ISRKIWSNAG PIVVRSSGPP PPPPADDGGF DDEDSHLNLN HANFIDHTPN FNLNPNGFDV KTSKSKKRPR GGEEKPGYIQ QYYHQSSGGG
301: TNVILPPTPV SMAAPQATAT ATAAASIPSL IEETVRSCLS PIFKELFNNL NGSRYSGFGM SLGPSPLVGF GNSLMSCDIN MKTDEKWRKQ QILELEVYSK
401: RLELVQDQIK AQLEELRSMN S
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.