Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G159600.1 | Wheat | nucleus | 96.83 | 96.83 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 94.52 | 94.25 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 93.08 | 92.82 |
| Zm00001d047421_P001 | Maize | nucleus | 57.64 | 53.33 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 57.35 | 52.65 |
| EER92218 | Sorghum | nucleus | 55.91 | 51.46 |
| Zm00001d029287_P001 | Maize | nucleus | 55.62 | 50.39 |
| Os03t0370250-01 | Rice | cytosol | 54.18 | 45.52 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 6.92 | 38.71 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 36.02 | 31.41 |
| KRG92750 | Soybean | nucleus | 31.41 | 30.88 |
| KRH34055 | Soybean | nucleus | 31.41 | 29.3 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 34.29 | 27.61 |
| CDY21105 | Canola | nucleus | 27.38 | 26.69 |
| Solyc02g083750.1.1 | Tomato | nucleus | 31.7 | 26.13 |
| PGSC0003DMT400009206 | Potato | nucleus | 31.41 | 25.95 |
| KRH68705 | Soybean | nucleus | 30.26 | 25.93 |
| CDY00009 | Canola | nucleus | 29.39 | 25.89 |
| KRG96940 | Soybean | nucleus | 29.97 | 25.74 |
| CDX80681 | Canola | nucleus | 28.82 | 24.33 |
| Bra009986.1-P | Field mustard | nucleus | 28.82 | 24.15 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.39 | 24.11 |
| PGSC0003DMT400057863 | Potato | nucleus | 30.84 | 23.94 |
| CDY30023 | Canola | nucleus | 27.67 | 23.82 |
| AT5G28040.2 | Thale cress | nucleus | 28.82 | 23.42 |
| CDY50767 | Canola | nucleus | 26.8 | 22.96 |
| Solyc01g097890.2.1 | Tomato | nucleus | 29.39 | 22.52 |
| KRG92748 | Soybean | cytosol | 23.05 | 22.41 |
| CDY41910 | Canola | nucleus | 27.09 | 22.12 |
| Bra040416.1-P | Field mustard | nucleus | 27.09 | 22.12 |
| AT3G04930.1 | Thale cress | nucleus | 28.53 | 21.71 |
| Bra040116.1-P | Field mustard | nucleus | 22.48 | 21.02 |
| KRH34056 | Soybean | nucleus | 21.33 | 19.73 |
| CDY68986 | Canola | nucleus | 18.44 | 18.88 |
| CDX86188 | Canola | cytosol | 29.11 | 16.78 |
| Bra036116.1-P | Field mustard | nucleus | 17.29 | 16.76 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 18.44 | 13.06 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G163600.1 | EnsemblPlantsGene:TraesCS4D01G163600 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF2 |
| PFAM:PF04504 | SEG:seg | MapMan:15.5.28 | : | : | : |
Description
No Description!
Coordinates
chr4D:+:259155577..259156753
Molecular Weight (calculated)
38070.7 Da
IEP (calculated)
5.178
GRAVY (calculated)
-0.527
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPMVDDPSA AGAAASSSFP DADAYGNGDS EDIDFPVDPI PNPPFSSAPV AAPASATATV GERRPLFQRL WTEEDEIVIL RAFAEFTAQR GTAFASHQYD
101: TEPFYEEMRR RLQLDFSKSQ LAEKLRRLKR KYRNCVERLR CSGNTFSFRS PHEQAVFEIA RNIWRPSSDK HGRDPNAADS EDDATITATN AAANGDAKSP
201: SSSKAHRRGR RRRTADLAAD ASEAPQPYTS GPMPVKTEDS LPAFFPHVSM DGAEPVVAPV VNTESSVLTP LFKEMVRAML GIGGCPSPLG LGAKVPEQPS
301: AILGIPMDGE KWRQQRILEL EVYLRRIDLL QDEVKSALEE LKSTPPT
101: TEPFYEEMRR RLQLDFSKSQ LAEKLRRLKR KYRNCVERLR CSGNTFSFRS PHEQAVFEIA RNIWRPSSDK HGRDPNAADS EDDATITATN AAANGDAKSP
201: SSSKAHRRGR RRRTADLAAD ASEAPQPYTS GPMPVKTEDS LPAFFPHVSM DGAEPVVAPV VNTESSVLTP LFKEMVRAML GIGGCPSPLG LGAKVPEQPS
301: AILGIPMDGE KWRQQRILEL EVYLRRIDLL QDEVKSALEE LKSTPPT
001: MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
101: AGSAVPVSVI PVDSDPKWHR MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS KLQLDFNKNQ LVEKLRRLKK
201: KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
301: RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP
401: FNFGFGVEGG GNKAVADERW RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
Arabidopsis Description
Probable transcription factor At3g04930 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.