Factsheet for GSMUA_Achr10P02050_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g01600.t01	Wine grape	cytosol, mitochondrion	6.38	43.55
GSMUA_Achr8P22220_001	Banana	nucleus	41.37	40.6
GSMUA_Achr7P02150_001	Banana	cytosol	8.98	35.51
Os07t0636100-01	Rice	nucleus	18.44	31.08
HORVU5Hr1G051570.1	Barley	plastid	24.82	30.52
CDY21105	Canola	nucleus	25.53	30.34
KRG92750	Soybean	nucleus	25.3	30.31
TraesCS3B01G200500.1	Wheat	nucleus	26.71	30.05
HORVU4Hr1G045570.1	Barley	nucleus	24.59	29.89
Zm00001d022266_P001	Maize	nucleus	26.24	29.68
TraesCS4D01G163600.1	Wheat	nucleus	24.11	29.39
TraesCS4A01G138100.1	Wheat	nucleus	24.11	29.31
Zm00001d006945_P001	Maize	nucleus	25.53	29.27
TraesCS4B01G159600.1	Wheat	nucleus	23.88	29.11
Zm00001d040254_P001	Maize	nucleus	27.42	29.07
EES02686	Sorghum	nucleus	27.66	28.96
TraesCS3A01G165200.1	Wheat	nucleus	27.19	28.89
TraesCS3D01G176400.1	Wheat	nucleus	27.19	28.89
EER97613	Sorghum	nucleus	25.53	28.8
HORVU2Hr1G027390.1	Barley	plastid	25.3	28.61
EES02423	Sorghum	nucleus	26.95	28.08
TraesCS2A01G151700.1	Wheat	nucleus	25.06	28.04
TraesCS2D01G156800.1	Wheat	nucleus	24.82	27.78
KRH34055	Soybean	nucleus	24.35	27.69
TraesCS2B01G176900.1	Wheat	nucleus	24.59	27.59
EER92218	Sorghum	nucleus	24.35	27.32
CDY30023	Canola	nucleus	26.0	27.3
HORVU3Hr1G034150.3	Barley	nucleus	26.0	27.23
Zm00001d047421_P001	Maize	nucleus	23.64	26.67
Os01t0249900-01	Rice	plastid	19.39	26.28
CDY00009	Canola	nucleus	24.11	25.89
CDY50767	Canola	nucleus	24.59	25.68
CDX80681	Canola	nucleus	24.82	25.55
KRG96940	Soybean	nucleus	24.35	25.5
Bra009986.1-P	Field mustard	nucleus	24.82	25.36
Zm00001d029287_P001	Maize	nucleus	22.22	24.54
Bra040416.1-P	Field mustard	nucleus	24.59	24.47
KRH68705	Soybean	nucleus	23.4	24.44
Os03t0370250-01	Rice	cytosol	23.64	24.21
CDY41910	Canola	nucleus	24.11	24.0
AT5G28040.2	Thale cress	nucleus	24.11	23.89
Solyc02g083750.1.1	Tomato	nucleus	23.64	23.75
Bra040116.1-P	Field mustard	nucleus	20.57	23.45
PGSC0003DMT400009206	Potato	nucleus	23.17	23.33
PGSC0003DMT400057863	Potato	nucleus	23.64	22.37
Solyc01g097890.2.1	Tomato	nucleus	23.88	22.3
AT3G04930.1	Thale cress	nucleus	23.17	21.49
KRG92748	Soybean	cytosol	15.84	18.77
CDX86188	Canola	cytosol	25.06	17.61
Bra036116.1-P	Field mustard	nucleus	13.95	16.48
KRH34056	Soybean	nucleus	14.42	16.27
CDY68986	Canola	nucleus	13.0	16.22
GSMUA_AchrUn_...	Banana	nucleus	14.89	15.29

Protein Annotations

EnsemblPlants:GSMUA_Achr10P02050_001	EnsemblPlants:GSMUA_Achr10T02050_001	EnsemblPlantsGene:GSMUA_Achr10G02050_001	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	ncoils:Coil	PANTHER:PTHR31662
PANTHER:PTHR31662:SF6	PFAM:PF04504	SEG:seg	UniParc:UPI0002968891	UniProt:M0REN2	MapMan:15.5.28

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G02050_001]

Coordinates

chr10:+:5255842..5257559

Molecular Weight (calculated)

47093.9 Da

IEP (calculated)

5.545

GRAVY (calculated)

-0.644

Length

423 amino acids

Sequence
(BLAST)

001: MTTHRKQIRN TVTRVNVQRT ARFLSVQREL KQSSCLSAPS VPISKPNPKP EPHAYVVLDR SIKEEEEEMP TAEEAEQERP VFDDDDDDDV SESVGSEDDD
101: VDGNGHATPP SSQLQAPTEP SVVVAAESGG LHPSASSDQA TNLNPNPNTT LFDPTAAALS PPQNGAIPVP VLPIAAISSP SADAAFFNPT SSSVAVPGTT
201: TSASEERRSL AVVSFDESRR LFQRLWTDEE EIKILRGFFE FTSKRGTTFA SHQYDTGPFY EEIKKQFQIE FTKNQLIEKL RRLKKKYRNC VSRMGSVGKG
301: FAFKSSHERA IYDIARRIWS AGSKRVHESD DEDLNTSNNA ISDEIIAVPI NDGSLGSHRR ISRSRRCMRR RMAEDVATVD ATTAVDDKWR KQQILELEVY
401: LKRIELVMDH IKATMEELKS AAS

Best Arabidopsis Sequence Match ( AT5G28040.2 )
(BLAST)

001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG

Arabidopsis Description

Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.