Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68986 | Canola | nucleus | 50.0 | 58.11 |
| CDX80681 | Canola | nucleus | 58.12 | 55.72 |
| CDY21105 | Canola | nucleus | 48.22 | 53.37 |
| AT5G28040.2 | Thale cress | nucleus | 57.11 | 52.69 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 8.12 | 51.61 |
| CDY50767 | Canola | nucleus | 52.28 | 50.86 |
| CDY30023 | Canola | nucleus | 51.27 | 50.12 |
| CDY41910 | Canola | nucleus | 52.54 | 48.71 |
| CDX86188 | Canola | cytosol | 56.35 | 36.88 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 26.65 | 30.26 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 28.68 | 30.05 |
| Zm00001d022266_P001 | Maize | nucleus | 28.43 | 29.95 |
| Zm00001d006945_P001 | Maize | nucleus | 27.92 | 29.81 |
| EES02686 | Sorghum | nucleus | 30.2 | 29.46 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 29.7 | 29.4 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 25.89 | 29.39 |
| Zm00001d040254_P001 | Maize | nucleus | 29.7 | 29.32 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 25.89 | 29.31 |
| Os07t0636100-01 | Rice | nucleus | 18.53 | 29.08 |
| HORVU5Hr1G051570.1 | Barley | plastid | 25.38 | 29.07 |
| EES02423 | Sorghum | nucleus | 29.7 | 28.82 |
| EER97613 | Sorghum | nucleus | 27.41 | 28.8 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 28.93 | 28.64 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 29.19 | 28.47 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 25.13 | 28.45 |
| HORVU2Hr1G027390.1 | Barley | plastid | 26.9 | 28.34 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 26.9 | 28.04 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 26.4 | 27.59 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 26.4 | 27.51 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 29.95 | 27.38 |
| EER92218 | Sorghum | nucleus | 26.14 | 27.32 |
| Zm00001d047421_P001 | Maize | nucleus | 25.89 | 27.2 |
| KRG92748 | Soybean | cytosol | 24.62 | 27.17 |
| Os01t0249900-01 | Rice | plastid | 21.32 | 26.92 |
| KRH34056 | Soybean | nucleus | 24.37 | 25.6 |
| Zm00001d029287_P001 | Maize | nucleus | 23.86 | 24.54 |
| Os03t0370250-01 | Rice | cytosol | 25.38 | 24.21 |
| GSMUA_Achr10P... | Banana | mitochondrion | 25.89 | 24.11 |
| CDY52323 | Canola | nucleus | 10.15 | 23.67 |
| CDY27657 | Canola | nucleus | 15.99 | 20.72 |
| CDY32382 | Canola | nucleus | 14.47 | 20.21 |
| CDX89436 | Canola | nucleus | 18.02 | 20.17 |
| CDY11061 | Canola | nucleus | 18.02 | 19.45 |
| CDY18747 | Canola | nucleus | 17.51 | 19.33 |
| CDX92682 | Canola | nucleus | 18.02 | 19.19 |
| CDY12911 | Canola | nucleus | 9.39 | 19.17 |
| CDX97966 | Canola | nucleus | 15.74 | 18.9 |
| CDX99698 | Canola | nucleus | 14.47 | 18.51 |
| CDY01140 | Canola | nucleus | 12.94 | 18.48 |
| CDY61958 | Canola | nucleus | 17.01 | 18.46 |
| CDY07275 | Canola | nucleus | 16.75 | 18.44 |
| CDY68087 | Canola | nucleus | 13.71 | 17.53 |
| CDY49787 | Canola | nucleus | 15.48 | 16.44 |
| CDY26346 | Canola | nucleus | 16.24 | 15.53 |
| CDX94469 | Canola | nucleus | 4.82 | 14.07 |
Protein Annotations
| EnsemblPlants:CDY00009 | EnsemblPlantsGene:GSBRNA2T00109484001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF6 |
| PFAM:PF04504 | ProteinID:CDY00009 | ProteinID:CDY00009.1 | SEG:seg | UniParc:UPI0004EE80EC | MapMan:15.5.28 |
Description
BnaC09g02920D
Coordinates
chrLK031916:-:212159..213502
Molecular Weight (calculated)
42985.7 Da
IEP (calculated)
4.833
GRAVY (calculated)
-0.515
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDERDAVE SPEMEEDGSA GGGGIAGESD SDDDQQLMPE PDVAAVSAAA DLNSPLLSAT AEDTVTVAIP SGSTLPAAAF PVDSDPKRRR ATEIVVHLRP
101: PPPPIDDSRR LFQRLWTDED EIELLRGFLD YVTCHRGSSS STSSHPPDTA PFYELIKSKL RVEFSKNQLV EKLRRLKKKY RNVMSKIGSG KDVFFKSPHD
201: QATFDISRKI WNQTGKIIGF EDNNVIDLEE QPSSTNVDVD SDNVLEKKVA VSRKRSRSRI GRIDEDNKPI SLSDGPTASG AGANENVAAF GEFSDGRSLG
301: GLIEETVKSC VSPLIKEMMN GATGMMMAAV GVYPGGGGGH GMGVLSPMLM PNLGDERWRR QQILELEVYS RRLELVQEQI RATLHELKTM PSGR
101: PPPPIDDSRR LFQRLWTDED EIELLRGFLD YVTCHRGSSS STSSHPPDTA PFYELIKSKL RVEFSKNQLV EKLRRLKKKY RNVMSKIGSG KDVFFKSPHD
201: QATFDISRKI WNQTGKIIGF EDNNVIDLEE QPSSTNVDVD SDNVLEKKVA VSRKRSRSRI GRIDEDNKPI SLSDGPTASG AGANENVAAF GEFSDGRSLG
301: GLIEETVKSC VSPLIKEMMN GATGMMMAAV GVYPGGGGGH GMGVLSPMLM PNLGDERWRR QQILELEVYS RRLELVQEQI RATLHELKTM PSGR
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.