Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019847.1-P | Field mustard | nucleus | 95.43 | 87.92 |
| CDY49787 | Canola | nucleus | 82.01 | 72.51 |
| CDX99698 | Canola | nucleus | 39.94 | 42.53 |
| CDY27657 | Canola | nucleus | 35.98 | 38.82 |
| CDY32382 | Canola | nucleus | 32.62 | 37.94 |
| CDY12911 | Canola | nucleus | 22.26 | 37.82 |
| CDY52323 | Canola | nucleus | 18.9 | 36.69 |
| CDY01140 | Canola | nucleus | 28.66 | 34.06 |
| AT1G11510.1 | Thale cress | nucleus | 35.98 | 33.52 |
| CDY07275 | Canola | nucleus | 35.98 | 32.96 |
| CDY68087 | Canola | nucleus | 30.79 | 32.79 |
| CDY61958 | Canola | nucleus | 34.15 | 30.85 |
| CDY18747 | Canola | nucleus | 31.1 | 28.57 |
| CDX89436 | Canola | nucleus | 26.52 | 24.72 |
| CDY26346 | Canola | nucleus | 30.79 | 24.51 |
| Os09t0451700-00 | Rice | nucleus | 12.2 | 22.22 |
| CDX92682 | Canola | nucleus | 23.48 | 20.81 |
| PGSC0003DMT400079215 | Potato | nucleus | 25.0 | 20.55 |
| CDY11061 | Canola | nucleus | 22.26 | 20.0 |
| KRH21647 | Soybean | nucleus | 27.13 | 19.87 |
| KRH10688 | Soybean | nucleus | 25.61 | 19.22 |
| KRH57853 | Soybean | nucleus | 20.12 | 17.05 |
| CDY21105 | Canola | nucleus | 18.29 | 16.85 |
| CDY00009 | Canola | nucleus | 18.9 | 15.74 |
| CDY30023 | Canola | nucleus | 18.9 | 15.38 |
| CDY50767 | Canola | nucleus | 18.9 | 15.31 |
| CDX80681 | Canola | nucleus | 18.29 | 14.6 |
| CDY41910 | Canola | nucleus | 18.6 | 14.35 |
| CDX94469 | Canola | nucleus | 5.79 | 14.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.77 | 13.35 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 17.99 | 12.94 |
| Zm00001d005865_P001 | Maize | nucleus | 16.77 | 12.56 |
| CDY68986 | Canola | nucleus | 12.5 | 12.09 |
| EER96833 | Sorghum | nucleus | 16.16 | 11.99 |
| KXG25358 | Sorghum | nucleus, plastid | 15.85 | 11.95 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 17.68 | 11.86 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 17.38 | 11.63 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 17.38 | 11.63 |
| Zm00001d020688_P001 | Maize | nucleus | 14.94 | 11.45 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 16.77 | 11.22 |
| Os08t0467600-00 | Rice | nucleus | 16.77 | 10.34 |
| CDX86188 | Canola | cytosol | 18.6 | 10.13 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 5.79 | 3.15 |
Protein Annotations
| EnsemblPlants:CDX97966 | EnsemblPlantsGene:GSBRNA2T00105319001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDX97966 | ProteinID:CDX97966.1 | SEG:seg | UniParc:UPI0004EE27A2 | MapMan:15.5.28 | : |
Description
BnaA06g07170D
Coordinates
chrLK031902:-:270887..271957
Molecular Weight (calculated)
36418.1 Da
IEP (calculated)
6.707
GRAVY (calculated)
-0.922
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKRFNPLE DPPSASSSDE DDQVKTTSLA RNSSSEEETD DESSLKSAPE KHQASDSESG SDEKNPGTKD SAVVKKNHDS KKVKPLTKKR SLSERDGAAS
101: KEAKKTYFQR VWSEEDEIAV LQGLIDYRNH TGASPYDDTN AFYLSVKKSI SFDVSKTQVI KKIWGLKTKY ENNLGKGELT FSKPHDRKAF DLSKFVWGAD
201: GAALDSASKK SSKSSSKKVE PEKQELASSS SPNGKSCEEE AMAYKGEASS VVEVDAFDKS VLVKALARFG VDDLSAQRGW SRLALEDKKR FEEEWKVLQL
301: RELEFYSKKS GFIHEVITKM AESFPPNP
101: KEAKKTYFQR VWSEEDEIAV LQGLIDYRNH TGASPYDDTN AFYLSVKKSI SFDVSKTQVI KKIWGLKTKY ENNLGKGELT FSKPHDRKAF DLSKFVWGAD
201: GAALDSASKK SSKSSSKKVE PEKQELASSS SPNGKSCEEE AMAYKGEASS VVEVDAFDKS VLVKALARFG VDDLSAQRGW SRLALEDKKR FEEEWKVLQL
301: RELEFYSKKS GFIHEVITKM AESFPPNP
001: MSRRFNPLED PPSASSSDEE GKEIARNSSS DDEDDVSSEN PSPLKTTLDA VSDSESGSDE ETDSDSELEK KKDQVVTNPV DVKRAKKVSG EEEKKKSGGG
101: GEETKKTYFQ RLWTEDDEIV VLQGLIDDKK DTGVSNTNKV YELVKKSISF DVSKNQLMEK LRALKKKYEN NLGKAKDGVE PTFVKPHDRK AFELSKLVWG
201: GIRMALASGM KSNEKSKKSS KFESVKHELD SSLPNSKNNC EDEVMDEGEV SFTKSSLVRS IVGLGMDELT AQQGLSKLAS KDMKRFYEQW KAMQAREFEF
301: FLQKHGFLFE VLSKISEAFG SNA
101: GEETKKTYFQ RLWTEDDEIV VLQGLIDDKK DTGVSNTNKV YELVKKSISF DVSKNQLMEK LRALKKKYEN NLGKAKDGVE PTFVKPHDRK AFELSKLVWG
201: GIRMALASGM KSNEKSKKSS KFESVKHELD SSLPNSKNNC EDEVMDEGEV SFTKSSLVRS IVGLGMDELT AQQGLSKLAS KDMKRFYEQW KAMQAREFEF
301: FLQKHGFLFE VLSKISEAFG SNA
Arabidopsis Description
Probable transcription factor At1g11510 [Source:UniProtKB/Swiss-Prot;Acc:C0SUU6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.