Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11061 | Canola | nucleus | 73.51 | 74.52 |
| CDX89436 | Canola | nucleus | 62.97 | 66.19 |
| CDX94469 | Canola | nucleus | 21.35 | 58.52 |
| AT4G25210.1 | Thale cress | nucleus | 46.22 | 46.47 |
| AT4G00130.1 | Thale cress | mitochondrion | 18.65 | 35.57 |
| CDY52323 | Canola | nucleus | 12.97 | 28.4 |
| CDY68087 | Canola | nucleus | 22.16 | 26.62 |
| CDY32382 | Canola | nucleus | 20.27 | 26.6 |
| CDY12911 | Canola | nucleus | 13.51 | 25.91 |
| CDY27657 | Canola | nucleus | 21.08 | 25.66 |
| CDY61958 | Canola | nucleus | 25.14 | 25.62 |
| CDY01140 | Canola | nucleus | 18.65 | 25.0 |
| CDY07275 | Canola | nucleus | 23.78 | 24.58 |
| CDY18747 | Canola | nucleus | 22.7 | 23.53 |
| CDX97966 | Canola | nucleus | 20.81 | 23.48 |
| CDX99698 | Canola | nucleus | 18.38 | 22.08 |
| CDY49787 | Canola | nucleus | 21.35 | 21.29 |
| KRH10688 | Soybean | nucleus | 25.14 | 21.28 |
| PGSC0003DMT400079215 | Potato | nucleus | 22.43 | 20.8 |
| KRH57853 | Soybean | nucleus | 21.62 | 20.67 |
| KRH21647 | Soybean | nucleus | 23.78 | 19.64 |
| CDY00009 | Canola | nucleus | 19.19 | 18.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.0 | 17.96 |
| CDY21105 | Canola | nucleus | 17.03 | 17.7 |
| CDY50767 | Canola | nucleus | 18.38 | 16.79 |
| CDX80681 | Canola | nucleus | 18.65 | 16.79 |
| CDY26346 | Canola | nucleus | 17.57 | 15.78 |
| CDY30023 | Canola | nucleus | 17.03 | 15.63 |
| CDY41910 | Canola | nucleus | 17.03 | 14.82 |
| Os09t0451700-00 | Rice | nucleus | 7.03 | 14.44 |
| CDY68986 | Canola | nucleus | 12.97 | 14.16 |
| EER96833 | Sorghum | nucleus | 16.22 | 13.57 |
| KXG25358 | Sorghum | nucleus, plastid | 15.14 | 12.87 |
| Zm00001d020688_P001 | Maize | nucleus | 14.59 | 12.62 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 15.41 | 12.5 |
| Zm00001d005865_P001 | Maize | nucleus | 14.59 | 12.33 |
| CDX86188 | Canola | cytosol | 18.38 | 11.3 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 14.59 | 11.04 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 14.59 | 11.02 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 14.32 | 10.82 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 14.05 | 10.61 |
| Os08t0467600-00 | Rice | nucleus | 14.32 | 9.96 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 4.32 | 2.65 |
Protein Annotations
| EnsemblPlants:CDX92682 | EnsemblPlantsGene:GSBRNA2T00154493001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 |
| PFAM:PF04504 | ProteinID:CDX92682 | ProteinID:CDX92682.1 | SEG:seg | UniParc:UPI0004EEE5D4 | MapMan:15.5.28 |
Description
BnaC07g39400D
Coordinates
chrLK031873:+:311678..312790
Molecular Weight (calculated)
40890.1 Da
IEP (calculated)
5.779
GRAVY (calculated)
-0.910
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKQTDKIE NPPVASSSEE EEEEESGSSG EESNSSDDEA GDVQSKLTQK KPVAPPPPAK KPESDSEEES ESDSDSEPAT KTKPLNAVVT KPIPATLPES
101: STPKRSLKQA DNEPKKKAKT STTTEQAKKK PSTSAADEEV KKISGEEAKK MFQRLFSETD EIAMLQGFLD FTSTKGDPSE NMDAFCDYVK TLIDFNASKA
201: QIVTKLQRCK KKFVNIVKNS LKRGKTEDQI TYAKDLEQKT FELSRKIWGS DGVLPAKPRK KSKEVELLST PKKEAEVETQ KKVSVVDTHL SSSREMALFF
301: KAENVSVLGL DESTVSAVWD MVGDGPKKRE MEEKLKKLKA KQMELCLQRT SLVDYTAKMI FKNNASSSSS
101: STPKRSLKQA DNEPKKKAKT STTTEQAKKK PSTSAADEEV KKISGEEAKK MFQRLFSETD EIAMLQGFLD FTSTKGDPSE NMDAFCDYVK TLIDFNASKA
201: QIVTKLQRCK KKFVNIVKNS LKRGKTEDQI TYAKDLEQKT FELSRKIWGS DGVLPAKPRK KSKEVELLST PKKEAEVETQ KKVSVVDTHL SSSREMALFF
301: KAENVSVLGL DESTVSAVWD MVGDGPKKRE MEEKLKKLKA KQMELCLQRT SLVDYTAKMI FKNNASSSSS
001: MAPKKAEEVV ESPPVSSEEE ESGSSGEESE SSAEVPKKVE SSQKPESDSE GESESESSSG PEPESEPAKT IKLKPVGTKP IPETSGSAAT VPESSTAKRP
101: LKEAAPEAIK KQKTSDTEHV KKPITNDEVK KISSEDAKKM FQRLFSETDE IALLQGIIDF TSTKGDPYED IDAFCIYVKK LIDFDATKNQ IVTKLQRLKK
201: KFNNAVKNSL KKGKTEDDIE FAKDLEQKGF ELSRKIWGSN GVLVTGKSSR KKVGGTPAPK EMKLVAHSTP KKQQEEAKKP ERTEAKVVNT GLSIGKEIAS
301: FLNADNGSSC GLDESTLTAV WAKVADGAEK REVEEKWKKL KAKQFELCLQ RSGLVNETAK MIFKAYES
101: LKEAAPEAIK KQKTSDTEHV KKPITNDEVK KISSEDAKKM FQRLFSETDE IALLQGIIDF TSTKGDPYED IDAFCIYVKK LIDFDATKNQ IVTKLQRLKK
201: KFNNAVKNSL KKGKTEDDIE FAKDLEQKGF ELSRKIWGSN GVLVTGKSSR KKVGGTPAPK EMKLVAHSTP KKQQEEAKKP ERTEAKVVNT GLSIGKEIAS
301: FLNADNGSSC GLDESTLTAV WAKVADGAEK REVEEKWKKL KAKQFELCLQ RSGLVNETAK MIFKAYES
Arabidopsis Description
GEBPLGLABROUS1 enhancer-binding protein-like [Source:UniProtKB/Swiss-Prot;Acc:Q9SB42]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.