Factsheet for Os08t0467600-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 19621931
nucleus: 23303719
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25358	Sorghum	nucleus, plastid	35.15	42.99
Os09t0451700-00	Rice	nucleus	14.47	42.78
Zm00001d049991_P001	Maize	nucleus, plastid	35.9	41.89
GSMUA_AchrUn_...	Banana	nucleus	17.67	22.82
Os07t0636100-01	Rice	nucleus	9.77	20.72
CDY32382	Canola	nucleus	10.9	20.57
CDY68087	Canola	nucleus	11.65	20.13
Bra021317.1-P	Field mustard	nucleus	11.28	19.48
AT4G00130.1	Thale cress	mitochondrion	6.95	19.07
CDY18747	Canola	nucleus	12.78	19.05
CDY12911	Canola	nucleus	6.77	18.65
AT1G61730.1	Thale cress	nucleus	13.16	18.62
CDX94469	Canola	nucleus	4.7	18.52
AT4G00390.1	Thale cress	nucleus	12.59	18.41
PGSC0003DMT400079215	Potato	nucleus	13.72	18.3
KRH57853	Soybean	nucleus	13.16	18.09
Bra025445.1-P	Field mustard	nucleus	10.34	17.92
KRH10688	Soybean	nucleus	14.29	17.39
CDY07275	Canola	nucleus	11.65	17.32
AT1G44810.1	Thale cress	nucleus	9.59	17.23
CDY61958	Canola	nucleus	11.65	17.08
CDY49787	Canola	nucleus	11.84	16.98
CDX99698	Canola	nucleus	9.77	16.88
Bra032717.1-P	Field mustard	nucleus	10.53	16.87
Bra034488.1-P	Field mustard	nucleus	10.15	16.77
CDX97966	Canola	nucleus	10.34	16.77
CDY01140	Canola	nucleus	8.65	16.67
Bra027078.1-P	Field mustard	nucleus	11.84	16.58
AT4G00250.1	Thale cress	nucleus	9.77	16.3
Bra019847.1-P	Field mustard	nucleus	10.9	16.29
CDY27657	Canola	nucleus	9.21	16.12
AT4G25210.1	Thale cress	nucleus	11.09	16.03
VIT_00s0868g00010.t01	Wine grape	nucleus	13.16	16.02
Bra031402.1-P	Field mustard	nucleus	9.96	15.96
AT2G01370.1	Thale cress	mitochondrion	7.52	15.87
CDY26346	Canola	nucleus	12.22	15.78
AT4G00238.1	Thale cress	nucleus	10.15	15.65
KRH21647	Soybean	nucleus	13.16	15.62
Bra038583.1-P	Field mustard	nucleus	12.22	15.51
AT1G66420.1	Thale cress	nucleus	8.08	15.25
Os01t0249900-01	Rice	plastid	8.83	15.06
Os03t0370250-01	Rice	cytosol	11.65	15.01
Bra013873.1-P	Field mustard	nucleus	9.77	14.53
AT4G01260.1	Thale cress	nucleus	8.83	14.46
VIT_12s0059g02690.t01	Wine grape	nucleus	11.84	14.45
CDX92682	Canola	nucleus	9.96	14.32
CDX89436	Canola	nucleus	9.4	14.2
AT4G00610.1	Thale cress	plastid	8.65	14.02
CDY11061	Canola	nucleus	9.4	13.7
AT1G11510.1	Thale cress	nucleus	9.02	13.64
CDY52323	Canola	nucleus	4.32	13.61
Bra019183.1-P	Field mustard	nucleus	9.02	13.11
AT1G55950.1	Thale cress	mitochondrion	5.08	12.33
VIT_00s0999g00010.t01	Wine grape	cytosol, nucleus	3.01	2.65

Protein Annotations

EnsemblPlants:Os08t0467600-00	EnsemblPlantsGene:Os08g0467600	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	PANTHER:PTHR31662	PANTHER:PTHR31662:SF3	PFAM:PF04504
ProteinID:BAD09553.1	ProteinID:BAD10788.1	ProteinID:BAT05813.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000023AE6A
UniProt:Q6YSC2	MapMan:15.5.28	:	:	:	:

Description

Hypothetical conserved gene. (Os08t0467600-00)

Coordinates

chr8:+:23001273..23003145

Molecular Weight (calculated)

57252.5 Da

IEP (calculated)

10.615

GRAVY (calculated)

-0.902

Length

532 amino acids

Sequence
(BLAST)

001: MSRAARRACH WVWVGSLSLS VSPSWLLPQG RNCIPAGRVI ERGGQRGERR EIDLIEGKET HKAFKPQNPN PPSPHPLAMA PKRPAAASGS ASEASDCEAG
101: GAGRRRSPSR SRSPSRSASP SRSRSKTPPH NAAVLSSTPA SAAVDFVAAS DSDAGADADA RLASPRRSRE RSPRLHSDSD NSAAATAEAA EAAAAAAFDD
201: GDDEGNATPP PRSRRSSRVE ATGVKPISSR PMDASRRPAA ASSQSQRRSK RPRSSPTQHS PEQHKRPPRV WNPQDEVTIL RALISYRAKN GALPGSSQDT
301: GKLHNMIRGQ LSVKASTTQL SDKVRRLKHK YNLILTRVTK SGRDPDLPTE HDREVYELSK KVWGTKSGGA GAGSGGGGGG GGGRVYENAE VVQSDEEQGS
401: RDDSDEDMES GWDDRDHRNR RLKAIVVANG NGNAVTGGRS VHGNGSGKGD VADKGKDMYP YLWEAVEELS KEHPSGTAFR KAFGVLDGSR ARAMEEKLNR
501: FRLSEIRQQL RRMDLMKETI KMVLDALEGS DL

Best Arabidopsis Sequence Match ( AT4G00390.1 )
(BLAST)

001: MTKKLDPPTA PSSDEDDVET SEDDSSSSEE DEPIKSLPAT TAAAPAKSTA VSAATPAKST SVSAAAPSKS TAVSAAADSD SGSESETDSD SESTDPPKSG
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN

Arabidopsis Description

Probable transcription factor At4g00390 [Source:UniProtKB/Swiss-Prot;Acc:O23063]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.