Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27657 | Canola | nucleus | 32.95 | 38.16 |
| Bra025445.1-P | Field mustard | nucleus | 32.95 | 37.78 |
| CDX97966 | Canola | nucleus | 33.52 | 35.98 |
| Bra019847.1-P | Field mustard | nucleus | 36.08 | 35.67 |
| CDY49787 | Canola | nucleus | 34.66 | 32.88 |
| CDX99698 | Canola | nucleus | 28.41 | 32.47 |
| AT1G44810.1 | Thale cress | nucleus | 23.86 | 28.38 |
| AT1G61730.1 | Thale cress | nucleus | 28.41 | 26.6 |
| AT4G00390.1 | Thale cress | nucleus | 26.14 | 25.27 |
| AT4G00250.1 | Thale cress | nucleus | 20.74 | 22.88 |
| Os09t0451700-00 | Rice | nucleus | 11.65 | 22.78 |
| AT1G66420.1 | Thale cress | nucleus | 18.18 | 22.7 |
| AT2G01370.1 | Thale cress | mitochondrion | 15.34 | 21.43 |
| AT4G00610.1 | Thale cress | plastid | 19.32 | 20.73 |
| AT4G00238.1 | Thale cress | nucleus | 20.17 | 20.58 |
| AT4G00130.1 | Thale cress | mitochondrion | 11.08 | 20.1 |
| CDY26346 | Canola | nucleus | 23.01 | 19.66 |
| AT4G01260.1 | Thale cress | nucleus | 17.9 | 19.38 |
| Bra038583.1-P | Field mustard | nucleus | 23.01 | 19.33 |
| KRH21647 | Soybean | nucleus | 23.86 | 18.75 |
| KRH10688 | Soybean | nucleus | 22.73 | 18.31 |
| PGSC0003DMT400079215 | Potato | nucleus | 20.17 | 17.79 |
| AT4G25210.1 | Thale cress | nucleus | 18.47 | 17.66 |
| KRH57853 | Soybean | nucleus | 18.75 | 17.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.9 | 15.29 |
| AT1G55950.1 | Thale cress | mitochondrion | 8.81 | 14.16 |
| AT5G28040.2 | Thale cress | nucleus | 17.05 | 14.05 |
| AT3G04930.1 | Thale cress | nucleus | 17.05 | 13.16 |
| KXG25358 | Sorghum | nucleus, plastid | 14.77 | 11.95 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 15.34 | 11.02 |
| Zm00001d005865_P001 | Maize | nucleus | 13.64 | 10.96 |
| EER96833 | Sorghum | nucleus | 13.64 | 10.86 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 15.06 | 10.84 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 15.06 | 10.82 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 14.77 | 10.61 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 13.64 | 10.53 |
| Zm00001d020688_P001 | Maize | nucleus | 12.22 | 10.05 |
| Os08t0467600-00 | Rice | nucleus | 13.64 | 9.02 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 4.83 | 2.81 |
Protein Annotations
| MapMan:15.5.28 | EntrezGene:837694 | ProteinID:AAF16644.1 | ProteinID:AEE28746.1 | ArrayExpress:AT1G11510 | EnsemblPlantsGene:AT1G11510 |
| RefSeq:AT1G11510 | TAIR:AT1G11510 | RefSeq:AT1G11510-TAIR-G | EnsemblPlants:AT1G11510.1 | TAIR:AT1G11510.1 | ProteinID:BAH30287.1 |
| UniProt:C0SUU6 | ncoils:Coil | InterPro:GEBP | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | RefSeq:NP_172618.1 | PFAM:PF04504 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | UniParc:UPI0000162D22 |
| SEG:seg | : | : | : | : | : |
Description
Probable transcription factor At1g11510 [Source:UniProtKB/Swiss-Prot;Acc:C0SUU6]
Coordinates
chr1:-:3871723..3872929
Molecular Weight (calculated)
39232.8 Da
IEP (calculated)
5.330
GRAVY (calculated)
-0.893
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRFNPLED PPSASSSDEE GKEIARNSSS DDEDDVSSEN PSPLKTTLDA VSDSESGSDE ETDSDSELEK KKDQVVTNPV DVKRAKKVKT SEKSGAKRSL
101: EVDEAAVSMD VKRAKKVSGE EEKKKSGGGG EETKKTYFQR LWTEDDEIVV LQGLIDDKKD TGVSNTNKVY ELVKKSISFD VSKNQLMEKL RALKKKYENN
201: LGKAKDGVEP TFVKPHDRKA FELSKLVWGG IRMALASGMK SNEKSKKSSK FESVKHELDS SLPNSKNNCE DEVMDEGEVS FTKSSLVRSI VGLGMDELTA
301: QQGLSKLASK DMKRFYEQWK AMQAREFEFF LQKHGFLFEV LSKISEAFGS NA
101: EVDEAAVSMD VKRAKKVSGE EEKKKSGGGG EETKKTYFQR LWTEDDEIVV LQGLIDDKKD TGVSNTNKVY ELVKKSISFD VSKNQLMEKL RALKKKYENN
201: LGKAKDGVEP TFVKPHDRKA FELSKLVWGG IRMALASGMK SNEKSKKSSK FESVKHELDS SLPNSKNNCE DEVMDEGEVS FTKSSLVRSI VGLGMDELTA
301: QQGLSKLASK DMKRFYEQWK AMQAREFEFF LQKHGFLFEV LSKISEAFGS NA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.