Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G25210.1 | Thale cress | nucleus | 34.15 | 30.16 |
| AT4G00130.1 | Thale cress | mitochondrion | 16.31 | 27.32 |
| AT1G66420.1 | Thale cress | nucleus | 18.77 | 21.63 |
| AT1G44810.1 | Thale cress | nucleus | 19.38 | 21.28 |
| AT4G00390.1 | Thale cress | nucleus | 22.46 | 20.05 |
| AT4G00250.1 | Thale cress | nucleus | 19.38 | 19.75 |
| AT4G00238.1 | Thale cress | nucleus | 20.62 | 19.42 |
| AT1G61730.1 | Thale cress | nucleus | 22.46 | 19.41 |
| Os09t0451700-00 | Rice | nucleus | 10.46 | 18.89 |
| PGSC0003DMT400079215 | Potato | nucleus | 22.77 | 18.55 |
| AT2G01370.1 | Thale cress | mitochondrion | 14.15 | 18.25 |
| AT1G11510.1 | Thale cress | nucleus | 19.38 | 17.9 |
| AT4G00610.1 | Thale cress | plastid | 17.54 | 17.38 |
| AT1G55950.1 | Thale cress | mitochondrion | 11.38 | 16.89 |
| KRH57853 | Soybean | nucleus | 19.69 | 16.54 |
| KRH10688 | Soybean | nucleus | 21.85 | 16.25 |
| KRH21647 | Soybean | nucleus | 21.54 | 15.62 |
| AT5G28040.2 | Thale cress | nucleus | 18.46 | 14.05 |
| AT3G04930.1 | Thale cress | nucleus | 19.08 | 13.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.62 | 13.11 |
| Zm00001d020688_P001 | Maize | nucleus | 16.62 | 12.62 |
| Zm00001d005865_P001 | Maize | nucleus | 16.92 | 12.56 |
| EER96833 | Sorghum | nucleus | 15.69 | 11.54 |
| KXG25358 | Sorghum | nucleus, plastid | 15.08 | 11.26 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 15.08 | 10.0 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 14.46 | 9.59 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 14.46 | 9.59 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 13.23 | 9.43 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 13.54 | 9.0 |
| Os08t0467600-00 | Rice | nucleus | 14.46 | 8.83 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 3.69 | 1.99 |
Protein Annotations
| MapMan:15.5.28 | EntrezGene:828088 | ProteinID:AAB61042.1 | ProteinID:ABE65509.1 | ProteinID:AEE82001.1 | ArrayExpress:AT4G01260 |
| EnsemblPlantsGene:AT4G01260 | RefSeq:AT4G01260 | TAIR:AT4G01260 | RefSeq:AT4G01260-TAIR-G | EnsemblPlants:AT4G01260.1 | TAIR:AT4G01260.1 |
| Unigene:At.65314 | ProteinID:BAH30505.1 | ProteinID:CAB80935.1 | ncoils:Coil | InterPro:GEBP | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| RefSeq:NP_192035.1 | UniProt:O04608 | PFAM:PF04504 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | UniParc:UPI000009F186 |
| SEG:seg | : | : | : | : | : |
Description
Probable transcription factor At4g01260 [Source:UniProtKB/Swiss-Prot;Acc:O04608]
Coordinates
chr4:-:528570..529547
Molecular Weight (calculated)
36225.7 Da
IEP (calculated)
9.720
GRAVY (calculated)
-0.913
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKQLKKIE NPVVSSSEEE ESASSGESAT SGEESDSSAD SPVKESSKKP VVVSKPSGSK TTTKPESSTA AKRSFEKTDE MSKKKSKNSM GEEDVKKKDE
101: TLKKNLFVRL FTEEDEAILL QGFLDFATKK ENPSDHIDDF YESIKNSISF DVTKPQLVTK IGNLKKKFNG RVSKGLKKGK NEEVMVFSKA SDQNCFDLSR
201: KIWGSNGVLY SKSKNMRQVQ LGGSVKVDED DQEPQKHRFV ISTLSSGQEL VSYLKVENPN SLGVDDTKWS AKLDKIKDGK QKRKMEKNLK KIQAKEEELS
301: MMRSEFVAAV TNVLSKQDNA SYSCK
101: TLKKNLFVRL FTEEDEAILL QGFLDFATKK ENPSDHIDDF YESIKNSISF DVTKPQLVTK IGNLKKKFNG RVSKGLKKGK NEEVMVFSKA SDQNCFDLSR
201: KIWGSNGVLY SKSKNMRQVQ LGGSVKVDED DQEPQKHRFV ISTLSSGQEL VSYLKVENPN SLGVDDTKWS AKLDKIKDGK QKRKMEKNLK KIQAKEEELS
301: MMRSEFVAAV TNVLSKQDNA SYSCK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.