Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT4G00250.1 | Thale cress | nucleus | 41.55 | 38.56 |
CDY01140 | Canola | nucleus | 35.47 | 38.04 |
CDY68087 | Canola | nucleus | 39.53 | 37.99 |
AT4G00238.1 | Thale cress | nucleus | 42.57 | 36.52 |
Bra034488.1-P | Field mustard | nucleus | 38.51 | 35.4 |
Bra032717.1-P | Field mustard | nucleus | 38.51 | 34.34 |
CDY18747 | Canola | nucleus | 40.88 | 33.89 |
AT2G01370.1 | Thale cress | mitochondrion | 28.04 | 32.94 |
AT4G00610.1 | Thale cress | plastid | 33.11 | 29.88 |
AT1G61730.1 | Thale cress | nucleus | 37.16 | 29.26 |
AT1G66420.1 | Thale cress | nucleus | 25.0 | 26.24 |
AT4G00390.1 | Thale cress | nucleus | 31.08 | 25.27 |
AT1G11510.1 | Thale cress | nucleus | 28.38 | 23.86 |
AT1G55950.1 | Thale cress | mitochondrion | 15.54 | 21.0 |
AT4G25210.1 | Thale cress | nucleus | 24.66 | 19.84 |
AT4G01260.1 | Thale cress | nucleus | 21.28 | 19.38 |
Os09t0451700-00 | Rice | nucleus | 10.81 | 17.78 |
AT4G00130.1 | Thale cress | mitochondrion | 10.81 | 16.49 |
KRH21647 | Soybean | nucleus | 23.31 | 15.4 |
PGSC0003DMT400079215 | Potato | nucleus | 20.61 | 15.29 |
KRH10688 | Soybean | nucleus | 22.3 | 15.1 |
KRH57853 | Soybean | nucleus | 18.58 | 14.21 |
AT5G28040.2 | Thale cress | nucleus | 19.93 | 13.82 |
GSMUA_AchrUn_... | Banana | nucleus | 17.91 | 12.86 |
Zm00001d020688_P001 | Maize | nucleus | 16.89 | 11.68 |
AT3G04930.1 | Thale cress | nucleus | 17.91 | 11.62 |
KXG25358 | Sorghum | nucleus, plastid | 16.89 | 11.49 |
Zm00001d049991_P001 | Maize | nucleus, plastid | 17.23 | 11.18 |
TraesCS5A01G234500.1 | Wheat | nucleus | 18.24 | 11.02 |
TraesCS5D01G241400.1 | Wheat | nucleus | 17.91 | 10.82 |
HORVU5Hr1G067630.1 | Barley | nucleus | 17.57 | 10.61 |
Zm00001d005865_P001 | Maize | nucleus | 15.54 | 10.5 |
EER96833 | Sorghum | nucleus | 15.54 | 10.41 |
TraesCS5B01G233000.1 | Wheat | nucleus | 16.22 | 9.82 |
Os08t0467600-00 | Rice | nucleus | 17.23 | 9.59 |
VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 6.42 | 3.15 |
Protein Annotations
MapMan:15.5.28 | EntrezGene:841045 | ProteinID:AAF78264.1 | ProteinID:AEE32054.1 | ArrayExpress:AT1G44810 | EnsemblPlantsGene:AT1G44810 |
RefSeq:AT1G44810 | TAIR:AT1G44810 | RefSeq:AT1G44810-TAIR-G | EnsemblPlants:AT1G44810.1 | TAIR:AT1G44810.1 | EMBL:AY042861 |
EMBL:AY072504 | Unigene:At.14883 | InterPro:GEBP | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | RefSeq:NP_564491.1 | PFAM:PF04504 |
PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
PO:PO:0025281 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | UniProt:Q9LPF0 | UniParc:UPI00000A7446 | SEG:seg |
Description
Probable transcription factor At1g44810 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPF0]
Coordinates
chr1:+:16923440..16924821
Molecular Weight (calculated)
32954.7 Da
IEP (calculated)
5.126
GRAVY (calculated)
-0.765
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKKLLNPLE DPPTASSSED VDEEISSGED EKEHISNSSS SEEENELKDL STQTLNSPST EAPTLDSGSE TNSDSDKPIV LTSQKKKEGT DSSGTKRASE
101: GTSSKDIKRA KKVSGDDDNK KFQSLWTKED EISLLQGMID FKAETGTSAH DDMNGFFDIA KRYISFDVSK IQFGDKIRGL KKKYFGVRKK KGLDLDHDKK
201: CLGLAKSIWG LDGKEVVVLG GDSETSNWFE KSFLVRVVAR LGVDECIVKW KWSKVSKETK KRIEEKMKMV EAKELELLSQ KIDVLKEVAS VIAETI
101: GTSSKDIKRA KKVSGDDDNK KFQSLWTKED EISLLQGMID FKAETGTSAH DDMNGFFDIA KRYISFDVSK IQFGDKIRGL KKKYFGVRKK KGLDLDHDKK
201: CLGLAKSIWG LDGKEVVVLG GDSETSNWFE KSFLVRVVAR LGVDECIVKW KWSKVSKETK KRIEEKMKMV EAKELELLSQ KIDVLKEVAS VIAETI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.