Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034488.1-P | Field mustard | nucleus | 70.29 | 60.25 |
| Bra032717.1-P | Field mustard | nucleus | 72.46 | 60.24 |
| CDY68087 | Canola | nucleus | 64.13 | 57.47 |
| CDY12911 | Canola | nucleus | 30.07 | 43.01 |
| CDY18747 | Canola | nucleus | 53.99 | 41.74 |
| CDY32382 | Canola | nucleus | 37.32 | 36.52 |
| AT1G44810.1 | Thale cress | nucleus | 38.04 | 35.47 |
| CDY52323 | Canola | nucleus | 19.57 | 31.95 |
| AT4G00250.1 | Thale cress | nucleus | 36.59 | 31.66 |
| CDY07275 | Canola | nucleus | 40.22 | 31.01 |
| CDY61958 | Canola | nucleus | 40.58 | 30.85 |
| CDX97966 | Canola | nucleus | 34.06 | 28.66 |
| AT4G00238.1 | Thale cress | nucleus | 35.51 | 28.41 |
| CDY27657 | Canola | nucleus | 31.16 | 28.29 |
| AT4G00610.1 | Thale cress | plastid | 30.8 | 25.91 |
| CDX99698 | Canola | nucleus | 28.62 | 25.65 |
| CDY49787 | Canola | nucleus | 31.88 | 23.72 |
| CDY11061 | Canola | nucleus | 27.17 | 20.55 |
| CDX89436 | Canola | nucleus | 25.0 | 19.6 |
| CDX94469 | Canola | nucleus | 9.42 | 19.26 |
| CDX92682 | Canola | nucleus | 25.0 | 18.65 |
| Os09t0451700-00 | Rice | nucleus | 11.96 | 18.33 |
| KRH10688 | Soybean | nucleus | 23.91 | 15.1 |
| CDY26346 | Canola | nucleus | 22.46 | 15.05 |
| KRH21647 | Soybean | nucleus | 24.28 | 14.96 |
| KRH57853 | Soybean | nucleus | 19.2 | 13.7 |
| CDY21105 | Canola | nucleus | 17.39 | 13.48 |
| PGSC0003DMT400079215 | Potato | nucleus | 19.2 | 13.28 |
| CDY00009 | Canola | nucleus | 18.48 | 12.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.84 | 12.62 |
| CDX80681 | Canola | nucleus | 18.48 | 12.41 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 19.57 | 11.84 |
| CDY30023 | Canola | nucleus | 17.03 | 11.66 |
| CDY50767 | Canola | nucleus | 17.03 | 11.6 |
| CDY41910 | Canola | nucleus | 17.03 | 11.06 |
| KXG25358 | Sorghum | nucleus, plastid | 17.39 | 11.03 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 19.2 | 10.84 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 18.84 | 10.61 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 18.48 | 10.41 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 18.48 | 10.41 |
| EER96833 | Sorghum | nucleus | 15.58 | 9.73 |
| Zm00001d005865_P001 | Maize | nucleus | 15.22 | 9.59 |
| Zm00001d020688_P001 | Maize | nucleus | 14.86 | 9.58 |
| Os08t0467600-00 | Rice | nucleus | 16.67 | 8.65 |
| CDX86188 | Canola | cytosol | 18.84 | 8.64 |
| CDY68986 | Canola | nucleus | 10.51 | 8.55 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 4.71 | 2.15 |
Protein Annotations
| EnsemblPlants:CDY01140 | EnsemblPlantsGene:GSBRNA2T00111212001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDY01140 | ProteinID:CDY01140.1 | SEG:seg | UniParc:UPI0004EF3939 | MapMan:15.5.28 | : |
Description
BnaA04g06790D
Coordinates
chrLK031924:+:429302..430522
Molecular Weight (calculated)
30707.0 Da
IEP (calculated)
9.764
GRAVY (calculated)
-0.481
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKKKLTPLE DPPTASSSDD DQVEALSKSE KPIAVTKPKA VKKRPIETTS VSAKRARTAE EAKKPSSFQR LWSEEDEVSL LQGMIDFKAD SGKSPYEDMD
101: RFYELASKSI SFEASKIQFV DKIRSLKRKY MGKAKHGAES LTKAHDIDCL KLATCIWGLA LDSNSSAKKK KLWLLNLLMV LAGGDKDKEV LINGGGASKS
201: HGVRADDWFE DSFLVGSIAG LGVSEQFVKQ KWSMVTVETK KRMAEKWKLL QAKEMELVLH KTDFMREIGS VIAEAS
101: RFYELASKSI SFEASKIQFV DKIRSLKRKY MGKAKHGAES LTKAHDIDCL KLATCIWGLA LDSNSSAKKK KLWLLNLLMV LAGGDKDKEV LINGGGASKS
201: HGVRADDWFE DSFLVGSIAG LGVSEQFVKQ KWSMVTVETK KRMAEKWKLL QAKEMELVLH KTDFMREIGS VIAEAS
001: MNKKLLNPLE DPPTASSSED VDEEISSGED EKEHISNSSS SEEENELKDL STQTLNSPST EAPTLDSGSE TNSDSDKPIV LTSQKKKEGT DSSGTKRASE
101: GTSSKDIKRA KKVSGDDDNK KFQSLWTKED EISLLQGMID FKAETGTSAH DDMNGFFDIA KRYISFDVSK IQFGDKIRGL KKKYFGVRKK KGLDLDHDKK
201: CLGLAKSIWG LDGKEVVVLG GDSETSNWFE KSFLVRVVAR LGVDECIVKW KWSKVSKETK KRIEEKMKMV EAKELELLSQ KIDVLKEVAS VIAETI
101: GTSSKDIKRA KKVSGDDDNK KFQSLWTKED EISLLQGMID FKAETGTSAH DDMNGFFDIA KRYISFDVSK IQFGDKIRGL KKKYFGVRKK KGLDLDHDKK
201: CLGLAKSIWG LDGKEVVVLG GDSETSNWFE KSFLVRVVAR LGVDECIVKW KWSKVSKETK KRIEEKMKMV EAKELELLSQ KIDVLKEVAS VIAETI
Arabidopsis Description
Probable transcription factor At1g44810 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPF0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.