Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12911 | Canola | nucleus | 40.78 | 75.65 |
| CDY32382 | Canola | nucleus | 53.35 | 67.73 |
| CDY61958 | Canola | nucleus | 57.26 | 56.47 |
| CDY52323 | Canola | nucleus | 22.91 | 48.52 |
| AT1G61730.1 | Thale cress | nucleus | 48.04 | 45.74 |
| CDY68087 | Canola | nucleus | 35.2 | 40.91 |
| CDY01140 | Canola | nucleus | 31.01 | 40.22 |
| AT4G00390.1 | Thale cress | nucleus | 39.11 | 38.46 |
| CDX97966 | Canola | nucleus | 32.96 | 35.98 |
| CDY18747 | Canola | nucleus | 34.08 | 34.17 |
| CDY49787 | Canola | nucleus | 34.64 | 33.42 |
| CDX99698 | Canola | nucleus | 28.49 | 33.12 |
| CDY27657 | Canola | nucleus | 26.54 | 31.25 |
| CDX89436 | Canola | nucleus | 25.7 | 26.14 |
| CDY11061 | Canola | nucleus | 25.98 | 25.48 |
| CDX92682 | Canola | nucleus | 24.58 | 23.78 |
| KRH10688 | Soybean | nucleus | 25.14 | 20.59 |
| KRH21647 | Soybean | nucleus | 25.14 | 20.09 |
| CDY26346 | Canola | nucleus | 22.91 | 19.9 |
| CDX94469 | Canola | nucleus | 7.26 | 19.26 |
| Os09t0451700-00 | Rice | nucleus | 9.5 | 18.89 |
| PGSC0003DMT400079215 | Potato | nucleus | 20.95 | 18.8 |
| KRH57853 | Soybean | nucleus | 20.11 | 18.6 |
| CDY21105 | Canola | nucleus | 17.32 | 17.42 |
| CDY00009 | Canola | nucleus | 18.44 | 16.75 |
| CDX80681 | Canola | nucleus | 18.72 | 16.3 |
| CDY50767 | Canola | nucleus | 18.44 | 16.3 |
| CDY41910 | Canola | nucleus | 18.72 | 15.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.88 | 15.53 |
| EER96833 | Sorghum | nucleus | 18.72 | 15.16 |
| CDY30023 | Canola | nucleus | 17.04 | 15.14 |
| KXG25358 | Sorghum | nucleus, plastid | 18.16 | 14.94 |
| Zm00001d020688_P001 | Maize | nucleus | 16.76 | 14.02 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 17.6 | 13.82 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 17.88 | 13.06 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 17.6 | 12.86 |
| Zm00001d005865_P001 | Maize | nucleus | 15.36 | 12.56 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 16.76 | 12.27 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 16.76 | 12.24 |
| CDY68986 | Canola | nucleus | 11.17 | 11.8 |
| Os08t0467600-00 | Rice | nucleus | 17.32 | 11.65 |
| CDX86188 | Canola | cytosol | 18.72 | 11.13 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 7.82 | 4.64 |
Protein Annotations
| EnsemblPlants:CDY07275 | EnsemblPlantsGene:GSBRNA2T00124135001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDY07275 | ProteinID:CDY07275.1 | SEG:seg | UniParc:UPI0004EEB886 | MapMan:15.5.28 | : |
Description
BnaC04g18960D
Coordinates
chrLK031976:+:885068..886265
Molecular Weight (calculated)
39662.2 Da
IEP (calculated)
6.215
GRAVY (calculated)
-0.969
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKKRDPLEN PPAASSSGDD DEVDSSAGEE EEREDDDDAS SSEELPVKSH SSSAAVTIAV PGKTAAQQAS DLDSGSETET DSDSDTEQPP NQRSGKAILA
101: AAKSKKEKSP PPATKSGTKR PSEGTSKETN SKRAKKTCED SKKPPAFQRL WTEEDEIAVL QGMIDFKNDT GNSPYDDTNA YYDYIKKSIS FEVSKNQFMD
201: KLRSLKKKYM GKEKPSFTKP HDQKSYRLCM YIWGPDGMGL ETAVKSNGVS KKKTMKLDSV KQDLSFASSP NGKAVVDDDK RVKCDWFENS FLVRGIAGFG
301: VDEHYVKQRW SLVPVETKKT VEEKVKMLQA KEIEFVLQKT KILHEVTSMI AEASKNKP
101: AAKSKKEKSP PPATKSGTKR PSEGTSKETN SKRAKKTCED SKKPPAFQRL WTEEDEIAVL QGMIDFKNDT GNSPYDDTNA YYDYIKKSIS FEVSKNQFMD
201: KLRSLKKKYM GKEKPSFTKP HDQKSYRLCM YIWGPDGMGL ETAVKSNGVS KKKTMKLDSV KQDLSFASSP NGKAVVDDDK RVKCDWFENS FLVRGIAGFG
301: VDEHYVKQRW SLVPVETKKT VEEKVKMLQA KEIEFVLQKT KILHEVTSMI AEASKNKP
001: MTKKLNPLED PPTATSSDED DVETSEAGEA SDDSSSSEED VPIKIRIKSP SATTAAAPPA KSTAVSTAAD SDSGSETETD SDSESTNPPN SGSGKTIALN
101: TVNLKKKEDP TSSSATLALP AMKSGTKRPA SEAAATTSTK RVKKDEESVK KPGGFQRLWS EEDEILVLQG MIDFKADTGK SPYVDTNAFY DFLKKSISFE
201: VSKNQFMDKI RSLRKKYIGK EGRNEPSFVK AHDKKAFELS KFIWGPKGIA LDSNVKSNGV SKKSVAKKKI DSVKQELVFA GGSSTNGKKV EEDGGDDGCD
301: WFDNSSLVRM IASLGVDEYY VKQQWSLVSV ESKKIVEEKY KLLQAKELEF VLEKTKFLNE VASMFVEASK NKPLDT
101: TVNLKKKEDP TSSSATLALP AMKSGTKRPA SEAAATTSTK RVKKDEESVK KPGGFQRLWS EEDEILVLQG MIDFKADTGK SPYVDTNAFY DFLKKSISFE
201: VSKNQFMDKI RSLRKKYIGK EGRNEPSFVK AHDKKAFELS KFIWGPKGIA LDSNVKSNGV SKKSVAKKKI DSVKQELVFA GGSSTNGKKV EEDGGDDGCD
301: WFDNSSLVRM IASLGVDEYY VKQQWSLVSV ESKKIVEEKY KLLQAKELEF VLEKTKFLNE VASMFVEASK NKPLDT
Arabidopsis Description
Probable transcription factor At1g61730 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.