Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009986.1-P | Field mustard | nucleus | 89.78 | 89.13 |
| AT5G28040.2 | Thale cress | nucleus | 66.18 | 63.7 |
| CDY21105 | Canola | nucleus | 50.37 | 58.15 |
| CDY00009 | Canola | nucleus | 55.72 | 58.12 |
| CDY50767 | Canola | nucleus | 56.45 | 57.28 |
| CDX86188 | Canola | cytosol | 79.56 | 54.32 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 8.03 | 53.23 |
| CDY30023 | Canola | nucleus | 52.07 | 53.1 |
| CDY41910 | Canola | nucleus | 53.53 | 51.76 |
| CDY68986 | Canola | nucleus | 37.71 | 45.72 |
| Os07t0636100-01 | Rice | nucleus | 18.98 | 31.08 |
| Zm00001d022266_P001 | Maize | nucleus | 27.74 | 30.48 |
| Zm00001d006945_P001 | Maize | nucleus | 27.25 | 30.35 |
| EER97613 | Sorghum | nucleus | 27.25 | 29.87 |
| Zm00001d040254_P001 | Maize | nucleus | 28.95 | 29.82 |
| TraesCS2A01G151700.1 | Wheat | nucleus | 27.25 | 29.63 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 24.82 | 29.39 |
| TraesCS2D01G156800.1 | Wheat | nucleus | 27.01 | 29.37 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 24.82 | 29.31 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 24.82 | 29.31 |
| TraesCS3B01G200500.1 | Wheat | nucleus | 26.52 | 28.99 |
| TraesCS2B01G176900.1 | Wheat | nucleus | 26.52 | 28.91 |
| HORVU2Hr1G027390.1 | Barley | plastid | 26.28 | 28.88 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 24.33 | 28.82 |
| EES02686 | Sorghum | nucleus | 28.22 | 28.71 |
| EES02423 | Sorghum | nucleus | 28.22 | 28.57 |
| HORVU5Hr1G051570.1 | Barley | plastid | 23.6 | 28.2 |
| TraesCS3D01G176400.1 | Wheat | nucleus | 27.25 | 28.14 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 29.2 | 27.84 |
| TraesCS3A01G165200.1 | Wheat | nucleus | 26.76 | 27.64 |
| KRG92748 | Soybean | cytosol | 23.6 | 27.17 |
| EER92218 | Sorghum | nucleus | 24.82 | 27.06 |
| HORVU3Hr1G034150.3 | Barley | nucleus | 26.52 | 26.98 |
| Zm00001d047421_P001 | Maize | nucleus | 24.09 | 26.4 |
| Zm00001d029287_P001 | Maize | nucleus | 24.57 | 26.37 |
| CDY52323 | Canola | nucleus | 10.71 | 26.04 |
| Os01t0249900-01 | Rice | plastid | 19.71 | 25.96 |
| Os03t0370250-01 | Rice | cytosol | 25.79 | 25.67 |
| KRH34056 | Soybean | nucleus | 23.36 | 25.6 |
| GSMUA_Achr10P... | Banana | mitochondrion | 25.55 | 24.82 |
| CDX89436 | Canola | nucleus | 17.52 | 20.45 |
| CDY32382 | Canola | nucleus | 13.14 | 19.15 |
| CDY27657 | Canola | nucleus | 13.87 | 18.75 |
| CDY07275 | Canola | nucleus | 16.3 | 18.72 |
| CDX92682 | Canola | nucleus | 16.79 | 18.65 |
| CDY18747 | Canola | nucleus | 16.06 | 18.49 |
| CDY01140 | Canola | nucleus | 12.41 | 18.48 |
| CDX97966 | Canola | nucleus | 14.6 | 18.29 |
| CDY68087 | Canola | nucleus | 13.14 | 17.53 |
| CDY11061 | Canola | nucleus | 15.33 | 17.26 |
| CDY12911 | Canola | nucleus | 8.03 | 17.1 |
| CDY61958 | Canola | nucleus | 15.09 | 17.08 |
| CDX99698 | Canola | nucleus | 12.65 | 16.88 |
| CDY26346 | Canola | nucleus | 16.06 | 16.02 |
| CDY49787 | Canola | nucleus | 13.63 | 15.09 |
| CDX94469 | Canola | nucleus | 4.87 | 14.81 |
Protein Annotations
| EnsemblPlants:CDX80681 | EnsemblPlantsGene:GSBRNA2T00133835001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | ncoils:Coil | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF6 |
| PFAM:PF04504 | ProteinID:CDX80681 | ProteinID:CDX80681.1 | SEG:seg | UniParc:UPI0004EEAADA | MapMan:15.5.28 |
Description
BnaC07g27630D
Coordinates
chrLK031821:-:2073065..2074300
Molecular Weight (calculated)
44857.6 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.581
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSDEREAV FSLESPELEQ DGGAGGGGET DSDEEAVMPE PNAPDEDDDH EYEDLNSPLV TVTAKSSSAA TDTVTVALPA GSAVPVSSIP ADSDPKWHRT
101: TEIVHLRPPP PLDDSRRLFQ RLWTDEDEIE LLRGFLDYIA THRGTSSHPP DTAPFYEQIK SKLQLEFNKN QLVEKLRRLK KKYRNVMSKF SSGKEVVFKS
201: SHDQATFDIS RKIWNPTGKI IGFEDNNVME FEETNGNNAH VEVDSENVLE KKVTVSSGSR KRPRSRIGKI DEDKAVSLSD GPVPSVNLNE NVPAFGEFGD
301: GRNLGGLIEE TVKSCVSPLI KEMMDGTTGM MMAAVGGFPG GGGAHAMGVL SPMLMPSVNL GGFGGGNGGV GDERWRRQQI LELEVYSRRL ELVQEQIRAT
401: VNELKTMPSG G
101: TEIVHLRPPP PLDDSRRLFQ RLWTDEDEIE LLRGFLDYIA THRGTSSHPP DTAPFYEQIK SKLQLEFNKN QLVEKLRRLK KKYRNVMSKF SSGKEVVFKS
201: SHDQATFDIS RKIWNPTGKI IGFEDNNVME FEETNGNNAH VEVDSENVLE KKVTVSSGSR KRPRSRIGKI DEDKAVSLSD GPVPSVNLNE NVPAFGEFGD
301: GRNLGGLIEE TVKSCVSPLI KEMMDGTTGM MMAAVGGFPG GGGAHAMGVL SPMLMPSVNL GGFGGGNGGV GDERWRRQQI LELEVYSRRL ELVQEQIRAT
401: VNELKTMPSG G
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.