Factsheet for TraesCS4A01G138100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G045570.1	Barley	nucleus	95.4	95.4
TraesCS4D01G163600.1	Wheat	nucleus	94.25	94.52
TraesCS4B01G159600.1	Wheat	nucleus	91.67	91.93
Zm00001d047421_P001	Maize	nucleus	57.76	53.6
EER92218	Sorghum	nucleus	54.89	50.66
Zm00001d029287_P001	Maize	nucleus	55.17	50.13
TraesCS2A01G151700.1	Wheat	nucleus	52.3	48.15
Os03t0370250-01	Rice	cytosol	53.74	45.28
VIT_14s0030g01600.t01	Wine grape	cytosol, mitochondrion	6.9	38.71
TraesCS3A01G165200.1	Wheat	nucleus	36.78	32.16
KRG92750	Soybean	nucleus	31.03	30.59
KRH34055	Soybean	nucleus	31.9	29.84
GSMUA_Achr8P22220_001	Banana	nucleus	33.33	26.91
CDY21105	Canola	nucleus	27.3	26.69
PGSC0003DMT400009206	Potato	nucleus	31.32	25.95
Solyc02g083750.1.1	Tomato	nucleus	31.32	25.89
CDY00009	Canola	nucleus	29.31	25.89
KRH68705	Soybean	nucleus	29.89	25.68
KRG96940	Soybean	nucleus	29.6	25.5
CDX80681	Canola	nucleus	29.31	24.82
Bra009986.1-P	Field mustard	nucleus	29.31	24.64
GSMUA_Achr10P...	Banana	mitochondrion	29.31	24.11
PGSC0003DMT400057863	Potato	nucleus	30.75	23.94
CDY30023	Canola	nucleus	27.59	23.82
Solyc01g097890.2.1	Tomato	nucleus	29.89	22.96
AT5G28040.2	Thale cress	nucleus	27.59	22.48
CDY50767	Canola	nucleus	26.15	22.47
CDY41910	Canola	nucleus	27.3	22.35
KRG92748	Soybean	cytosol	22.41	21.85
Bra040416.1-P	Field mustard	nucleus	26.44	21.65
AT3G04930.1	Thale cress	nucleus	28.16	21.49
Bra040116.1-P	Field mustard	nucleus	22.41	21.02
KRH34056	Soybean	nucleus	20.69	19.2
CDY68986	Canola	nucleus	17.24	17.7
Bra036116.1-P	Field mustard	nucleus	17.82	17.32
CDX86188	Canola	cytosol	29.6	17.11
TraesCS5A01G234500.1	Wheat	nucleus	18.68	13.27

Protein Annotations

EnsemblPlants:TraesCS4A01G138100.1	EnsemblPlantsGene:TraesCS4A01G138100	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	ncoils:Coil	PANTHER:PTHR31662	PANTHER:PTHR31662:SF2
PFAM:PF04504	SEG:seg	MapMan:15.5.28	:	:	:

Description

No Description!

Coordinates

chr4A:-:202221098..202222267

Molecular Weight (calculated)

38205.9 Da

IEP (calculated)

5.192

GRAVY (calculated)

-0.536

Length

348 amino acids

Sequence
(BLAST)

001: MLPMVDDPSA AGAAASSSFP DADAYGNGDS EDIEFPVDPI PNPPFSSSAP VAAPASATAT VGERRPLFQR LWTEEDEIVI LRAFAEFTAQ RGTAFASHQY
101: DTEPFYEEMR RRLQLDFSKS QLAEKLRRLK RKYRNCVERL RCSGNTFSFR SPHEQAVFEI ARNIWRPSSD KHGRDPNAAD SEDDATITGT NAAANGDAKS
201: PSSSKAHRRG RRRRTADLAA DASEGPQPYI SGPMPVKTED SLPAFFPQVS MDGAEPVVAP VVNTESSVLT PLFKEMVRAM LGIGGCPSPL GLGAKVREQP
301: SAVLGIPMEG EKWRQQRILE LEVYLRRIDL LQDEVKSALE ELKSTPPT

Best Arabidopsis Sequence Match ( AT5G28040.2 )
(BLAST)

001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG

Arabidopsis Description

Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.