Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047421_P001 | Maize | nucleus | 69.45 | 70.93 |
| EER92218 | Sorghum | nucleus | 68.67 | 69.76 |
| TraesCS4D01G163600.1 | Wheat | nucleus | 50.39 | 55.62 |
| HORVU4Hr1G045570.1 | Barley | nucleus | 50.39 | 55.46 |
| TraesCS4B01G159600.1 | Wheat | nucleus | 50.13 | 55.33 |
| TraesCS4A01G138100.1 | Wheat | nucleus | 50.13 | 55.17 |
| Zm00001d006945_P001 | Maize | nucleus | 44.91 | 46.61 |
| Zm00001d022266_P001 | Maize | nucleus | 44.65 | 45.72 |
| VIT_14s0030g01600.t01 | Wine grape | cytosol, mitochondrion | 7.05 | 43.55 |
| Os03t0370250-01 | Rice | cytosol | 45.43 | 42.13 |
| Zm00001d040254_P001 | Maize | nucleus | 33.42 | 32.08 |
| KRH34055 | Soybean | nucleus | 26.63 | 27.42 |
| KRG92750 | Soybean | nucleus | 24.8 | 26.91 |
| CDY21105 | Canola | nucleus | 24.54 | 26.4 |
| GSMUA_Achr8P22220_001 | Banana | nucleus | 28.2 | 25.06 |
| CDX80681 | Canola | nucleus | 26.37 | 24.57 |
| PGSC0003DMT400009206 | Potato | nucleus | 26.63 | 24.29 |
| Solyc02g083750.1.1 | Tomato | nucleus | 26.63 | 24.23 |
| KRG96940 | Soybean | nucleus | 25.33 | 24.01 |
| KRH68705 | Soybean | nucleus | 25.33 | 23.95 |
| PGSC0003DMT400057863 | Potato | nucleus | 27.94 | 23.94 |
| CDY00009 | Canola | nucleus | 24.54 | 23.86 |
| Bra009986.1-P | Field mustard | nucleus | 25.59 | 23.67 |
| AT5G28040.2 | Thale cress | nucleus | 25.85 | 23.18 |
| CDY30023 | Canola | nucleus | 24.28 | 23.08 |
| Solyc01g097890.2.1 | Tomato | nucleus | 27.15 | 22.96 |
| GSMUA_Achr10P... | Banana | mitochondrion | 24.54 | 22.22 |
| CDY41910 | Canola | nucleus | 24.54 | 22.12 |
| Bra040116.1-P | Field mustard | nucleus | 20.89 | 21.56 |
| CDY50767 | Canola | nucleus | 22.72 | 21.48 |
| KRG92748 | Soybean | cytosol | 19.84 | 21.29 |
| AT3G04930.1 | Thale cress | nucleus | 24.8 | 20.83 |
| Bra040416.1-P | Field mustard | nucleus | 22.98 | 20.71 |
| KRH34056 | Soybean | nucleus | 19.06 | 19.47 |
| CDY68986 | Canola | nucleus | 14.62 | 16.52 |
| Bra036116.1-P | Field mustard | nucleus | 15.4 | 16.48 |
| CDX86188 | Canola | cytosol | 25.85 | 16.45 |
| Zm00001d020688_P001 | Maize | nucleus | 17.75 | 15.89 |
| Zm00001d005865_P001 | Maize | nucleus | 18.02 | 15.75 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 17.23 | 14.47 |
Protein Annotations
| EntrezGene:100275086 | MapMan:15.5.28 | UniProt:B6SNB5 | EMBL:BT087680 | ncoils:Coil | EMBL:EU954230 |
| InterPro:GEBP | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | ProteinID:ONL98406.1 | PFAM:PF04504 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF2 | UniParc:UPI000182B2F6 |
| EnsemblPlantsGene:Zm00001d029287 | EnsemblPlants:Zm00001d029287_P001 | EnsemblPlants:Zm00001d029287_T001 | SEG:seg | : | : |
Description
GeBP-transcription factor 18Probable transcription factor
Coordinates
chr1:-:64853687..64854838
Molecular Weight (calculated)
40717.8 Da
IEP (calculated)
5.136
GRAVY (calculated)
-0.321
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPTVDDPSA AGAMVSASFP DADAYGNGDS DDLDFPVDPN PNPVFSSPAA PASAGAAGER RPLFQRLWTD EDEIVILRAF AEFTAQRGTA FASHQYDTTP
101: FYEDMRRRLN TGFTKNQLVE KIRRLKRKYR NCVERLRVAG AGFNFRSPHE QAIFEIARTI WRPASDKHGR DSDDEGGGGG NNAHDATFAM DAATFAIDAA
201: LAAANGGSAK SPTSRPRRGR RRRTGDFPAD AVPETTLALP PAPMPVMTED VLPSFPQVTA AAVMDGGCGV SVDPASGLPA ALSTAAAAAA VSGSSTAENP
301: ILAALFKEMV HAMLSVGVGG STALLGLEPP PPIAGVPMEG EKWRQQRIQE LEVYLRRIDL LQDQARAALD ELRSAPHAGG MNT
101: FYEDMRRRLN TGFTKNQLVE KIRRLKRKYR NCVERLRVAG AGFNFRSPHE QAIFEIARTI WRPASDKHGR DSDDEGGGGG NNAHDATFAM DAATFAIDAA
201: LAAANGGSAK SPTSRPRRGR RRRTGDFPAD AVPETTLALP PAPMPVMTED VLPSFPQVTA AAVMDGGCGV SVDPASGLPA ALSTAAAAAA VSGSSTAENP
301: ILAALFKEMV HAMLSVGVGG STALLGLEPP PPIAGVPMEG EKWRQQRIQE LEVYLRRIDL LQDQARAALD ELRSAPHAGG MNT
001: MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
101: SDQKWHRMTE IVHQRPPIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFSSGK
201: EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG
301: VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE
401: VYSRRLELVQ EQIRATVNEL KTMPNGG
Arabidopsis Description
Probable transcription factor At5g28040 [Source:UniProtKB/Swiss-Prot;Acc:F4K5T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.