Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97966 | Canola | nucleus | 72.51 | 82.01 |
| CDX99698 | Canola | nucleus | 34.77 | 41.88 |
| CDY27657 | Canola | nucleus | 31.54 | 38.49 |
| CDY12911 | Canola | nucleus | 19.41 | 37.31 |
| CDY52323 | Canola | nucleus | 16.71 | 36.69 |
| CDY32382 | Canola | nucleus | 27.76 | 36.52 |
| AT1G11510.1 | Thale cress | nucleus | 32.88 | 34.66 |
| CDY07275 | Canola | nucleus | 33.42 | 34.64 |
| CDY68087 | Canola | nucleus | 27.76 | 33.44 |
| CDY01140 | Canola | nucleus | 23.72 | 31.88 |
| CDY61958 | Canola | nucleus | 29.92 | 30.58 |
| CDY18747 | Canola | nucleus | 26.15 | 27.17 |
| CDY26346 | Canola | nucleus | 28.3 | 25.49 |
| CDX89436 | Canola | nucleus | 23.18 | 24.43 |
| PGSC0003DMT400079215 | Potato | nucleus | 23.18 | 21.55 |
| CDX92682 | Canola | nucleus | 21.29 | 21.35 |
| Os09t0451700-00 | Rice | nucleus | 10.24 | 21.11 |
| CDY11061 | Canola | nucleus | 20.49 | 20.82 |
| KRH21647 | Soybean | nucleus | 24.53 | 20.31 |
| KRH10688 | Soybean | nucleus | 22.91 | 19.45 |
| KRH57853 | Soybean | nucleus | 20.22 | 19.38 |
| CDY21105 | Canola | nucleus | 16.44 | 17.13 |
| CDX94469 | Canola | nucleus | 5.93 | 16.3 |
| CDY50767 | Canola | nucleus | 17.52 | 16.05 |
| CDY00009 | Canola | nucleus | 16.44 | 15.48 |
| CDY30023 | Canola | nucleus | 16.44 | 15.14 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 19.68 | 14.9 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 19.41 | 14.69 |
| CDY41910 | Canola | nucleus | 16.44 | 14.35 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 18.6 | 14.08 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 18.33 | 13.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.36 | 13.84 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 16.98 | 13.82 |
| CDX80681 | Canola | nucleus | 15.09 | 13.63 |
| Zm00001d005865_P001 | Maize | nucleus | 15.9 | 13.47 |
| KXG25358 | Sorghum | nucleus, plastid | 15.09 | 12.87 |
| EER96833 | Sorghum | nucleus | 14.56 | 12.22 |
| Os08t0467600-00 | Rice | nucleus | 16.98 | 11.84 |
| CDY68986 | Canola | nucleus | 10.51 | 11.5 |
| Zm00001d020688_P001 | Maize | nucleus | 13.21 | 11.45 |
| CDX86188 | Canola | cytosol | 16.98 | 10.47 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 5.12 | 3.15 |
Protein Annotations
| EnsemblPlants:CDY49787 | EnsemblPlantsGene:GSBRNA2T00093807001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDY49787 | ProteinID:CDY49787.1 | SEG:seg | UniParc:UPI0004EE74E8 | UniProt:A0A078IIM9 | MapMan:15.5.28 |
Description
BnaCnng18000DBnaCnng18000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIM9]
Coordinates
chrLK032859:-:14150..15349
Molecular Weight (calculated)
40603.5 Da
IEP (calculated)
5.309
GRAVY (calculated)
-0.946
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKRFNPLE DPPSASSSDE DDQVKTTSLP GNSSSEDETD DESSKNPSSN KPESAPEKQQ VSNSDSGSDE ETDSDSQTVR VKKNPGSSSD AKSIAGTKDS
101: AVVKNHDSKK VKPLTKKRSL SETDGAAAAA SKEAKKVKSG GSGEEAKKTY FQRVWSEEDE IAVLQGLIDY RNDTGASPYD DTNAFYLSVK KSISFDVSKT
201: QVIKKIWGLK TKYENNLVKE ELTFSKPHDR KAFDLSKFVW GADAAALDSA SKKSSKSSSK KVEPEKQELA SSSSPNGKSC EEEAMTNKGE ASSVVEVDAF
301: DKSVLVKALA RFGVDDLSAQ RGWSRLALED KKRFEEEWKT LQLRELEFYS KKSGFIHEVI TKMAESFPPN P
101: AVVKNHDSKK VKPLTKKRSL SETDGAAAAA SKEAKKVKSG GSGEEAKKTY FQRVWSEEDE IAVLQGLIDY RNDTGASPYD DTNAFYLSVK KSISFDVSKT
201: QVIKKIWGLK TKYENNLVKE ELTFSKPHDR KAFDLSKFVW GADAAALDSA SKKSSKSSSK KVEPEKQELA SSSSPNGKSC EEEAMTNKGE ASSVVEVDAF
301: DKSVLVKALA RFGVDDLSAQ RGWSRLALED KKRFEEEWKT LQLRELEFYS KKSGFIHEVI TKMAESFPPN P
001: MSRRFNPLED PPSASSSDEE GKEIARNSSS DDEDDVSSEN PSPLKTTLDA VSDSESGSDE ETDSDSELEK KKDQVVTNPV DVKRAKKVKT SEKSGAKRSL
101: EVDEAAVSMD VKRAKKVSGE EEKKKSGGGG EETKKTYFQR LWTEDDEIVV LQGLIDDKKD TGVSNTNKVY ELVKKSISFD VSKNQLMEKL RALKKKYENN
201: LGKAKDGVEP TFVKPHDRKA FELSKLVWGG IRMALASGMK SNEKSKKSSK FESVKHELDS SLPNSKNNCE DEVMDEGEVS FTKSSLVRSI VGLGMDELTA
301: QQGLSKLASK DMKRFYEQWK AMQAREFEFF LQKHGFLFEV LSKISEAFGS NA
101: EVDEAAVSMD VKRAKKVSGE EEKKKSGGGG EETKKTYFQR LWTEDDEIVV LQGLIDDKKD TGVSNTNKVY ELVKKSISFD VSKNQLMEKL RALKKKYENN
201: LGKAKDGVEP TFVKPHDRKA FELSKLVWGG IRMALASGMK SNEKSKKSSK FESVKHELDS SLPNSKNNCE DEVMDEGEVS FTKSSLVRSI VGLGMDELTA
301: QQGLSKLASK DMKRFYEQWK AMQAREFEFF LQKHGFLFEV LSKISEAFGS NA
Arabidopsis Description
Probable transcription factor At1g11510 [Source:UniProtKB/Swiss-Prot;Acc:C0SUU6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.