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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
nucleus: 27291164
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH10688 Soybean nucleus 56.92 58.35
KRH57853 Soybean nucleus 29.24 33.85
Bra025445.1-P Field mustard nucleus 20.31 29.64
Bra031402.1-P Field mustard nucleus 21.88 29.52
CDY27657 Canola nucleus 18.97 27.96
CDY52323 Canola nucleus 10.49 27.81
CDY12911 Canola nucleus 11.83 27.46
CDY61958 Canola nucleus 22.1 27.27
CDX97966 Canola nucleus 19.87 27.13
CDY32382 Canola nucleus 16.74 26.6
VIT_00s0868g00010.t01 Wine grape nucleus 25.22 25.86
PGSC0003DMT400079215 Potato nucleus 22.99 25.81
Bra027078.1-P Field mustard nucleus 21.88 25.79
CDX99698 Canola nucleus 17.63 25.65
Bra019847.1-P Field mustard nucleus 20.31 25.56
CDX94469 Canola nucleus 7.59 25.19
CDY07275 Canola nucleus 20.09 25.14
CDX89436 Canola nucleus 19.64 25.0
Bra019183.1-P Field mustard nucleus 20.31 24.86
AT1G61730.1 Thale cress nucleus 20.76 24.73
Bra021317.1-P Field mustard nucleus 16.96 24.68
CDY68087 Canola nucleus 16.96 24.68
Bra013873.1-P Field mustard nucleus 19.64 24.58
CDY49787 Canola nucleus 20.31 24.53
CDY11061 Canola nucleus 19.87 24.38
CDY01140 Canola nucleus 14.96 24.28
AT4G25210.1 Thale cress nucleus 19.87 24.18
Os09t0451700-00 Rice nucleus 9.6 23.89
AT1G11510.1 Thale cress nucleus 18.75 23.86
CDY18747 Canola nucleus 18.97 23.81
CDX92682 Canola nucleus 19.64 23.78
AT1G44810.1 Thale cress nucleus 15.4 23.31
GSMUA_AchrUn_... Banana nucleus 20.98 22.82
AT4G00130.1 Thale cress mitochondrion 9.82 22.68
AT4G00390.1 Thale cress nucleus 18.3 22.53
AT4G00250.1 Thale cress nucleus 15.85 22.26
AT4G01260.1 Thale cress nucleus 15.62 21.54
AT1G66420.1 Thale cress nucleus 13.17 20.92
CDY26346 Canola nucleus 18.75 20.39
AT2G01370.1 Thale cress mitochondrion 11.38 20.24
Bra034488.1-P Field mustard nucleus 14.51 20.19
Bra032717.1-P Field mustard nucleus 14.51 19.58
KRG92750 Soybean nucleus 15.4 19.55
KRH34055 Soybean nucleus 16.07 19.35
AT4G00610.1 Thale cress plastid 13.84 18.9
Bra038583.1-P Field mustard nucleus 17.41 18.62
KRG92748 Soybean cytosol 14.73 18.49
Zm00001d020688_P001 Maize nucleus 17.63 18.46
AT4G00238.1 Thale cress nucleus 14.06 18.26
Zm00001d005865_P001 Maize nucleus 17.63 18.04
EER96833 Sorghum nucleus 17.63 17.87
KXG25358 Sorghum nucleus, plastid 16.96 17.47
HORVU5Hr1G067630.1 Barley nucleus 18.75 17.14
KRH68705 Soybean nucleus 15.4 17.04
KRG96940 Soybean nucleus 15.18 16.83
TraesCS5D01G241400.1 Wheat nucleus 18.08 16.53
TraesCS5B01G233000.1 Wheat nucleus 17.86 16.36
TraesCS5A01G234500.1 Wheat nucleus 17.86 16.33
KRH34056 Soybean nucleus 13.62 16.27
Zm00001d049991_P001 Maize nucleus, plastid 16.07 15.79
AT1G55950.1 Thale cress mitochondrion 7.59 15.53
Os08t0467600-00 Rice nucleus 15.62 13.16
Protein Annotations
EMBL:ACUP02008360EnsemblPlants:KRH21647EnsemblPlantsGene:GLYMA_13G251000EntrezGene:100807745GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:GEBPncoils:Coil
PANTHER:PTHR31662PANTHER:PTHR31662:SF1PFAM:PF04504ProteinID:KRH21647ProteinID:KRH21647.1SEG:seg
UniParc:UPI000233B64CUniProt:K7M1T5MapMan:15.5.28:::
Description
hypothetical protein
Coordinates
chr13:-:35823247..35825053
Molecular Weight (calculated)
49237.8 Da
IEP (calculated)
4.988
GRAVY (calculated)
-1.221
Length
448 amino acids
Sequence
(BLAST)
001: MAQKQKLRPS PLDEPPTASS SDSEEEEPQQ QQPSSQKNKE EEDEEVSSGE EEEEDEEEEE AASSEEEEED EDLPPPPVSK NPPPPPANPQ PQHSSSESET
101: ESGSETESEP DPTPVKVKPL ASKPMDQAQK PKAQPSPAPP PKLTLKRPAE NNNNNARVAD SKRAKKKATE SSSAANSAAA AASDDEMEED GKKSGDNSKK
201: FQRLWSEEDE LAIVKGVVEF TSKTGLDPLK FPNTNAFHDF VKKSLHVEVS CNQLKEKVRR LKKKFETQAG KGKNGEAPKF SKPHDQKFFE LSKKVWGREV
301: TAGANGGPVE KPKSNGSAVK SPKKKESGSR NVASAKKPKP ESKPEPVPVL SLEYKDSEKM QINQKPDGGD ASLFLRELAR SKEGASICKL DEDDVKRGLE
401: LIGESKRAEL RGKWKKLHLA EMELFANRSE LIGEQTKLIL EALQASDH
Best Arabidopsis Sequence Match ( AT1G11510.2 )
(BLAST)
001: MSRRFNPLED PPSASSSDEE GKEIARNSSS DDEDDVSSEN PSPLKTTLDA VSDSESGSDE ETDSDSELEK KKDQVVTNPV DVKRAKKVSG EEEKKKSGGG
101: GEETKKTYFQ RLWTEDDEIV VLQGLIDDKK DTGVSNTNKV YELVKKSISF DVSKNQLMEK LRALKKKYEN NLGKAKDGVE PTFVKPHDRK AFELSKLVWG
201: GIRMALASGM KSNEKSKKSS KFESVKHELD SSLPNSKNNC EDEVMDEGEV SFTKSSLVRS IVGLGMDELT AQQGLSKLAS KDMKRFYEQW KAMQAREFEF
301: FLQKHGFLFE VLSKISEAFG SNA
Arabidopsis Description
Probable transcription factor At1g11510 [Source:UniProtKB/Swiss-Prot;Acc:C0SUU6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.