Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G61730.1 | Thale cress | nucleus | 53.85 | 52.13 |
| CDY12911 | Canola | nucleus | 25.82 | 48.7 |
| CDY07275 | Canola | nucleus | 38.46 | 39.11 |
| CDY32382 | Canola | nucleus | 30.22 | 39.01 |
| CDY61958 | Canola | nucleus | 38.46 | 38.57 |
| Bra031402.1-P | Field mustard | nucleus | 34.62 | 37.95 |
| Bra021317.1-P | Field mustard | nucleus | 31.59 | 37.34 |
| Bra027078.1-P | Field mustard | nucleus | 37.09 | 35.53 |
| CDY52323 | Canola | nucleus | 15.38 | 33.14 |
| AT4G00250.1 | Thale cress | nucleus | 27.75 | 31.66 |
| AT1G44810.1 | Thale cress | nucleus | 25.27 | 31.08 |
| AT2G01370.1 | Thale cress | mitochondrion | 20.33 | 29.37 |
| AT1G66420.1 | Thale cress | nucleus | 21.98 | 28.37 |
| AT4G00238.1 | Thale cress | nucleus | 26.1 | 27.54 |
| AT4G00610.1 | Thale cress | plastid | 23.9 | 26.52 |
| AT1G11510.1 | Thale cress | nucleus | 25.27 | 26.14 |
| AT4G01260.1 | Thale cress | nucleus | 20.05 | 22.46 |
| Os09t0451700-00 | Rice | nucleus | 10.71 | 21.67 |
| AT4G25210.1 | Thale cress | nucleus | 21.15 | 20.92 |
| PGSC0003DMT400079215 | Potato | nucleus | 21.43 | 19.55 |
| AT4G00130.1 | Thale cress | mitochondrion | 10.16 | 19.07 |
| AT1G55950.1 | Thale cress | mitochondrion | 11.26 | 18.72 |
| KRH57853 | Soybean | nucleus | 19.78 | 18.6 |
| KRH21647 | Soybean | nucleus | 22.53 | 18.3 |
| AT5G28040.2 | Thale cress | nucleus | 19.51 | 16.63 |
| KRH10688 | Soybean | nucleus | 19.78 | 16.48 |
| EER96833 | Sorghum | nucleus | 19.51 | 16.06 |
| Zm00001d020688_P001 | Maize | nucleus | 18.41 | 15.65 |
| KXG25358 | Sorghum | nucleus, plastid | 18.13 | 15.17 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 18.96 | 15.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.03 | 15.05 |
| Zm00001d005865_P001 | Maize | nucleus | 17.58 | 14.61 |
| AT3G04930.1 | Thale cress | nucleus | 18.13 | 14.47 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 17.86 | 13.27 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 17.86 | 13.27 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 17.58 | 13.09 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 17.58 | 13.06 |
| Os08t0467600-00 | Rice | nucleus | 18.41 | 12.59 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 6.32 | 3.81 |
Protein Annotations
| MapMan:15.5.28 | EntrezGene:828200 | ProteinID:AAB62828.1 | ProteinID:AAF02786.1 | EMBL:AB493663 | ProteinID:AEE81872.1 |
| ArrayExpress:AT4G00390 | EnsemblPlantsGene:AT4G00390 | RefSeq:AT4G00390 | TAIR:AT4G00390 | RefSeq:AT4G00390-TAIR-G | EnsemblPlants:AT4G00390.1 |
| TAIR:AT4G00390.1 | EMBL:AY085566 | Unigene:At.34565 | ProteinID:CAB80797.1 | EMBL:DQ446789 | InterPro:GEBP |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | RefSeq:NP_191949.1 | UniProt:O23063 | PFAM:PF04504 |
| PO:PO:0001078 | PO:PO:0009010 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | UniParc:UPI00000AADE6 | SEG:seg |
Description
Probable transcription factor At4g00390 [Source:UniProtKB/Swiss-Prot;Acc:O23063]
Coordinates
chr4:-:171487..172845
Molecular Weight (calculated)
39211.2 Da
IEP (calculated)
6.048
GRAVY (calculated)
-0.765
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKKLDPPTA PSSDEDDVET SEDDSSSSEE DEPIKSLPAT TAAAPAKSTA VSAATPAKST SVSAAAPSKS TAVSAAADSD SGSESETDSD SESTDPPKSG
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.