CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21647	Soybean	nucleus	58.35	56.92
KRH57853	Soybean	nucleus	33.18	37.47
CDY52323	Canola	nucleus	11.44	29.59
Bra031402.1-P	Field mustard	nucleus	21.97	28.92
CDY27657	Canola	nucleus	19.68	28.29
CDY32382	Canola	nucleus	17.85	27.66
Bra025445.1-P	Field mustard	nucleus	19.22	27.36
CDY61958	Canola	nucleus	22.65	27.27
Bra019183.1-P	Field mustard	nucleus	22.43	26.78
Bra027078.1-P	Field mustard	nucleus	22.88	26.32
CDY11061	Canola	nucleus	21.97	26.3
CDY12911	Canola	nucleus	11.44	25.91
CDX89436	Canola	nucleus	20.82	25.85
CDX97966	Canola	nucleus	19.22	25.61
AT4G25210.1	Thale cress	nucleus	21.51	25.54
Bra021317.1-P	Field mustard	nucleus	17.85	25.32
Bra019847.1-P	Field mustard	nucleus	20.59	25.28
CDY07275	Canola	nucleus	20.59	25.14
CDX92682	Canola	nucleus	21.28	25.14
CDY68087	Canola	nucleus	17.62	25.0
Bra013873.1-P	Field mustard	nucleus	20.37	24.86
PGSC0003DMT400079215	Potato	nucleus	22.65	24.81
CDX94469	Canola	nucleus	7.55	24.44
AT4G00130.1	Thale cress	mitochondrion	10.76	24.23
CDY18747	Canola	nucleus	19.68	24.09
CDY01140	Canola	nucleus	15.1	23.91
Bra034488.1-P	Field mustard	nucleus	17.39	23.6
AT4G00250.1	Thale cress	nucleus	16.93	23.2
CDY49787	Canola	nucleus	19.45	22.91
Bra032717.1-P	Field mustard	nucleus	17.39	22.89
AT1G61730.1	Thale cress	nucleus	19.68	22.87
Os09t0451700-00	Rice	nucleus	9.38	22.78
AT1G11510.1	Thale cress	nucleus	18.31	22.73
CDX99698	Canola	nucleus	16.02	22.73
KRG92750	Soybean	nucleus	18.08	22.38
AT1G44810.1	Thale cress	nucleus	15.1	22.3
VIT_00s0868g00010.t01	Wine grape	nucleus	21.97	21.97
AT4G01260.1	Thale cress	nucleus	16.25	21.85
GSMUA_AchrUn_...	Banana	nucleus	20.59	21.84
AT4G00238.1	Thale cress	nucleus	16.48	20.87
AT1G66420.1	Thale cress	nucleus	13.27	20.57
KRH34055	Soybean	nucleus	17.39	20.43
AT2G01370.1	Thale cress	mitochondrion	11.44	19.84
AT4G00390.1	Thale cress	nucleus	16.48	19.78
KRG92748	Soybean	cytosol	15.79	19.33
CDY26346	Canola	nucleus	17.85	18.93
KRG96940	Soybean	nucleus	17.39	18.81
KRH68705	Soybean	nucleus	17.16	18.52
Zm00001d020688_P001	Maize	nucleus	18.08	18.46
KXG25358	Sorghum	nucleus, plastid	18.08	18.16
AT4G00610.1	Thale cress	plastid	13.5	17.99
AT1G55950.1	Thale cress	mitochondrion	8.92	17.81
EER96833	Sorghum	nucleus	17.85	17.65
Zm00001d005865_P001	Maize	nucleus	17.39	17.35
KRH34056	Soybean	nucleus	14.65	17.07
Bra038583.1-P	Field mustard	nucleus	16.25	16.95
Zm00001d049991_P001	Maize	nucleus, plastid	16.7	16.01
HORVU5Hr1G067630.1	Barley	nucleus	17.85	15.92
TraesCS5B01G233000.1	Wheat	nucleus	17.62	15.75
TraesCS5D01G241400.1	Wheat	nucleus	17.39	15.51
TraesCS5A01G234500.1	Wheat	nucleus	17.39	15.51
Os08t0467600-00	Rice	nucleus	17.39	14.29

Protein Annotations

EMBL:ACUP02009152	EnsemblPlants:KRH10688	EnsemblPlantsGene:GLYMA_15G063300	EntrezGene:100791520	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	ncoils:Coil
PANTHER:PTHR31662	PANTHER:PTHR31662:SF1	PFAM:PF04504	ProteinID:KRH10688	ProteinID:KRH10688.1	SEG:seg
UniParc:UPI0001E24724	UniProt:K7M9X4	MapMan:15.5.28	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:4844062..4846067

Molecular Weight (calculated)

48353.8 Da

IEP (calculated)

5.297

GRAVY (calculated)

-1.300

Length

437 amino acids

Sequence
(BLAST)

001: MAQKQKLRPS PLDEPPTASS SDSEEEEEQQ QQQPSSQQHE EEEEEVSSGE EEEASSEEEE DENLPPPPIS KNPPPPPPSN PQPQPTSSES ETESGSETES
101: EPHPTPVKVK PLASKPMDQA QKPKAQPSPA PPPPKSASKR PAENNNNNAR VADPKRAKKK ATESSSAAAI SDDEMEEDGK KSGDNSKKFQ RLWSEEDELA
201: ILKGVVEFTS KTGLDPLKFP NANAFHDFMK KSLHVEFSSN QLKEKLRRLK KKFETQAGKG KNGDAPKFSK PHDQKFFELS KKAWGSEDGG VANGSVEKPK
301: SNGNAAKSPN PKKKESGSRN VASAKKPKPE TNPEPAPVPS LEFKESERME IDQKPDGGDA CLFLRELVRY KEGANVSRLD EDDVKRGLEL IEESKRAELR
401: GKWKKLHHAE MELFANRSEL IGEQTKLILE ALRSSNH

Best Arabidopsis Sequence Match ( AT1G61730.1 )
(BLAST)

001: MTKKLNPLED PPTATSSDED DVETSEAGEA SDDSSSSEED VPIKIRIKSP SATTAAAPPA KSTAVSTAAD SDSGSETETD SDSESTNPPN SGSGKTIALN
101: TVNLKKKEDP TSSSATLALP AMKSGTKRPA SEAAATTSTK RVKKDEESVK KPGGFQRLWS EEDEILVLQG MIDFKADTGK SPYVDTNAFY DFLKKSISFE
201: VSKNQFMDKI RSLRKKYIGK EGRNEPSFVK AHDKKAFELS KFIWGPKGIA LDSNVKSNGV SKKSVAKKKI DSVKQELVFA GGSSTNGKKV EEDGGDDGCD
301: WFDNSSLVRM IASLGVDEYY VKQQWSLVSV ESKKIVEEKY KLLQAKELEF VLEKTKFLNE VASMFVEASK NKPLDT

Arabidopsis Description

Probable transcription factor At1g61730 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.