Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01140 | Canola | nucleus | 57.47 | 64.13 |
| CDY12911 | Canola | nucleus | 30.84 | 49.22 |
| CDY18747 | Canola | nucleus | 51.95 | 44.82 |
| CDY32382 | Canola | nucleus | 39.94 | 43.62 |
| AT1G44810.1 | Thale cress | nucleus | 37.99 | 39.53 |
| CDY52323 | Canola | nucleus | 21.43 | 39.05 |
| CDY61958 | Canola | nucleus | 43.18 | 36.64 |
| CDY07275 | Canola | nucleus | 40.91 | 35.2 |
| AT4G00238.1 | Thale cress | nucleus | 36.69 | 32.75 |
| AT4G00250.1 | Thale cress | nucleus | 33.12 | 31.97 |
| CDX97966 | Canola | nucleus | 32.79 | 30.79 |
| AT4G00610.1 | Thale cress | plastid | 29.87 | 28.05 |
| CDY27657 | Canola | nucleus | 27.6 | 27.96 |
| CDY49787 | Canola | nucleus | 33.44 | 27.76 |
| CDX99698 | Canola | nucleus | 27.27 | 27.27 |
| CDX94469 | Canola | nucleus | 10.71 | 24.44 |
| CDY11061 | Canola | nucleus | 27.6 | 23.29 |
| CDX92682 | Canola | nucleus | 26.62 | 22.16 |
| CDX89436 | Canola | nucleus | 25.32 | 22.16 |
| Os09t0451700-00 | Rice | nucleus | 10.39 | 17.78 |
| KRH10688 | Soybean | nucleus | 25.0 | 17.62 |
| KRH21647 | Soybean | nucleus | 24.68 | 16.96 |
| CDY26346 | Canola | nucleus | 22.4 | 16.75 |
| KRH57853 | Soybean | nucleus | 20.78 | 16.54 |
| PGSC0003DMT400079215 | Potato | nucleus | 20.78 | 16.04 |
| CDY21105 | Canola | nucleus | 16.88 | 14.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.16 | 14.32 |
| KXG25358 | Sorghum | nucleus, plastid | 19.81 | 14.02 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 20.45 | 13.82 |
| CDY00009 | Canola | nucleus | 17.53 | 13.71 |
| CDY50767 | Canola | nucleus | 17.86 | 13.58 |
| CDX80681 | Canola | nucleus | 17.53 | 13.14 |
| CDY30023 | Canola | nucleus | 16.56 | 12.66 |
| CDY68986 | Canola | nucleus | 13.31 | 12.09 |
| CDY41910 | Canola | nucleus | 16.56 | 12.0 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 18.83 | 11.86 |
| Os08t0467600-00 | Rice | nucleus | 20.13 | 11.65 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 17.86 | 11.22 |
| Zm00001d020688_P001 | Maize | nucleus | 15.58 | 11.21 |
| Zm00001d005865_P001 | Maize | nucleus | 15.91 | 11.19 |
| EER96833 | Sorghum | nucleus | 15.91 | 11.09 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 17.53 | 11.02 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 17.21 | 10.82 |
| CDX86188 | Canola | cytosol | 16.23 | 8.31 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 5.52 | 2.81 |
Protein Annotations
| EnsemblPlants:CDY68087 | EnsemblPlantsGene:GSBRNA2T00069226001 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:GEBP | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | PFAM:PF04504 |
| ProteinID:CDY68087 | ProteinID:CDY68087.1 | SEG:seg | UniParc:UPI0004EE70DE | UniProt:A0A078JRM1 | MapMan:15.5.28 |
Description
BnaCnng57540DBnaCnng57540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRM1]
Coordinates
chrLK036839:-:3869..5059
Molecular Weight (calculated)
34185.5 Da
IEP (calculated)
8.385
GRAVY (calculated)
-0.708
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKKKPNPLE DPPKASSSDD NEVEALSGDD EEEQISNDSS SDDLMNPVAI PSAKNSKSEK PNAVTKPKGG SLAVKKRPIE TTSVSAKRAK IAEEAKKPSS
101: FQRLWSEEDE VSLLQGMIDF KADTGKSPYE DMDRFYEITS KSISFEASKI QFVDKIRSLK RKYMGKVKHG AESLTKNHDI DCLKLANYIW GSHGMALNSN
201: VKKLGKEEEV VALESAAKSS GTPKKSKKKP VSVEANASDW FEDSFLVGSI AGLGVSERFV KEKWSMVTVE TKKRMEEKWK LLQAKEMELV LHKTDFMREI
301: GSVIAEAS
101: FQRLWSEEDE VSLLQGMIDF KADTGKSPYE DMDRFYEITS KSISFEASKI QFVDKIRSLK RKYMGKVKHG AESLTKNHDI DCLKLANYIW GSHGMALNSN
201: VKKLGKEEEV VALESAAKSS GTPKKSKKKP VSVEANASDW FEDSFLVGSI AGLGVSERFV KEKWSMVTVE TKKRMEEKWK LLQAKEMELV LHKTDFMREI
301: GSVIAEAS
001: MTKKLNPLED PPTATSSDED DVETSEAGEA SDDSSSSEED VPIKIRIKSP SATTAAAPPA KSTAVSTAAD SDSGSETETD SDSESTNPPN SGSGKTIALN
101: TVNLKKKEDP TSSSATLALP AMKSGTKRPA SEAAATTSTK RVKKDEESVK KPGGFQRLWS EEDEILVLQG MIDFKADTGK SPYVDTNAFY DFLKKSISFE
201: VSKNQFMDKI RSLRKKYIGK EGRNEPSFVK AHDKKAFELS KFIWGPKGIA LDSNVKSNGV SKKSVAKKKI DSVKQELVFA GGSSTNGKKV EEDGGDDGCD
301: WFDNSSLVRM IASLGVDEYY VKQQWSLVSV ESKKIVEEKY KLLQAKELEF VLEKTKFLNE VASMFVEASK NKPLDT
101: TVNLKKKEDP TSSSATLALP AMKSGTKRPA SEAAATTSTK RVKKDEESVK KPGGFQRLWS EEDEILVLQG MIDFKADTGK SPYVDTNAFY DFLKKSISFE
201: VSKNQFMDKI RSLRKKYIGK EGRNEPSFVK AHDKKAFELS KFIWGPKGIA LDSNVKSNGV SKKSVAKKKI DSVKQELVFA GGSSTNGKKV EEDGGDDGCD
301: WFDNSSLVRM IASLGVDEYY VKQQWSLVSV ESKKIVEEKY KLLQAKELEF VLEKTKFLNE VASMFVEASK NKPLDT
Arabidopsis Description
Probable transcription factor At1g61730 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.