Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G44810.1 | Thale cress | nucleus | 29.88 | 33.11 |
| CDY01140 | Canola | nucleus | 25.91 | 30.8 |
| CDY68087 | Canola | nucleus | 28.05 | 29.87 |
| AT2G01370.1 | Thale cress | mitochondrion | 22.87 | 29.76 |
| AT4G00238.1 | Thale cress | nucleus | 28.66 | 27.25 |
| AT1G61730.1 | Thale cress | nucleus | 29.88 | 26.06 |
| CDY18747 | Canola | nucleus | 28.35 | 26.05 |
| AT1G66420.1 | Thale cress | nucleus | 22.26 | 25.89 |
| Bra034488.1-P | Field mustard | nucleus | 25.3 | 25.78 |
| AT4G00250.1 | Thale cress | nucleus | 25.0 | 25.71 |
| Bra032717.1-P | Field mustard | nucleus | 25.61 | 25.3 |
| AT4G00390.1 | Thale cress | nucleus | 26.52 | 23.9 |
| AT1G55950.1 | Thale cress | mitochondrion | 15.24 | 22.83 |
| AT1G11510.1 | Thale cress | nucleus | 20.73 | 19.32 |
| Os09t0451700-00 | Rice | nucleus | 9.76 | 17.78 |
| AT4G01260.1 | Thale cress | nucleus | 17.38 | 17.54 |
| AT4G25210.1 | Thale cress | nucleus | 18.6 | 16.58 |
| PGSC0003DMT400079215 | Potato | nucleus | 18.29 | 15.04 |
| KRH57853 | Soybean | nucleus | 17.07 | 14.47 |
| KRH21647 | Soybean | nucleus | 18.9 | 13.84 |
| KRH10688 | Soybean | nucleus | 17.99 | 13.5 |
| AT4G00130.1 | Thale cress | mitochondrion | 7.93 | 13.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.24 | 12.14 |
| AT5G28040.2 | Thale cress | nucleus | 15.24 | 11.71 |
| AT3G04930.1 | Thale cress | nucleus | 15.55 | 11.18 |
| EER96833 | Sorghum | nucleus | 14.94 | 11.09 |
| TraesCS5D01G241400.1 | Wheat | nucleus | 16.46 | 11.02 |
| Zm00001d020688_P001 | Maize | nucleus | 14.33 | 10.98 |
| HORVU5Hr1G067630.1 | Barley | nucleus | 16.16 | 10.82 |
| TraesCS5A01G234500.1 | Wheat | nucleus | 16.16 | 10.82 |
| KXG25358 | Sorghum | nucleus, plastid | 14.33 | 10.8 |
| TraesCS5B01G233000.1 | Wheat | nucleus | 15.55 | 10.43 |
| Zm00001d005865_P001 | Maize | nucleus | 12.8 | 9.59 |
| Zm00001d049991_P001 | Maize | nucleus, plastid | 12.8 | 9.21 |
| Os08t0467600-00 | Rice | nucleus | 14.02 | 8.65 |
| VIT_00s0999g00010.t01 | Wine grape | cytosol, nucleus | 2.44 | 1.32 |
Protein Annotations
| MapMan:15.5.28 | EntrezGene:827994 | ProteinID:AAC13633.1 | ProteinID:AEE81909.1 | ArrayExpress:AT4G00610 | EnsemblPlantsGene:AT4G00610 |
| RefSeq:AT4G00610 | TAIR:AT4G00610 | RefSeq:AT4G00610-TAIR-G | EnsemblPlants:AT4G00610.1 | TAIR:AT4G00610.1 | Unigene:At.65313 |
| ProteinID:BAH30503.1 | ProteinID:CAB80870.1 | InterPro:GEBP | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | RefSeq:NP_191970.1 | UniProt:O65270 |
| PFAM:PF04504 | PANTHER:PTHR31662 | PANTHER:PTHR31662:SF1 | UniParc:UPI000009F61A | SEG:seg | : |
Description
Probable transcription factor At4g00610 [Source:UniProtKB/Swiss-Prot;Acc:O65270]
Coordinates
chr4:-:256957..257943
Molecular Weight (calculated)
37059.8 Da
IEP (calculated)
7.507
GRAVY (calculated)
-0.834
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSVQNLKTD QLLNFLFKNP TKFLSRFSPM AKNKTLVTPS TVKKSSDVAS TSKKLSGVAS PAKKPSGVTS PVKKPLEAVA STSSEEEEED EPSSDSESGS
101: ESESDTEAEP MTLAAAAPSS SNEKRQSEGK PEEERAKTET ETGKKPLLFQ RLWTDEDEIV FLQGMIKFAK DTGKNVSEDM NGFFEKLKDS ISFEVKTDQF
201: VNKIRSMKRK YIENKKTTTE HDKKCYELAE IIWVSDGDAT ALVKPKKKKL KVDEESDWFE RSFVDGAFKE LGPGVDEETW KKNWSLVPVK KRKRIEEKVK
301: SMQADELKTT WQKIDVVHEM RSLMAKYV
101: ESESDTEAEP MTLAAAAPSS SNEKRQSEGK PEEERAKTET ETGKKPLLFQ RLWTDEDEIV FLQGMIKFAK DTGKNVSEDM NGFFEKLKDS ISFEVKTDQF
201: VNKIRSMKRK YIENKKTTTE HDKKCYELAE IIWVSDGDAT ALVKPKKKKL KVDEESDWFE RSFVDGAFKE LGPGVDEETW KKNWSLVPVK KRKRIEEKVK
301: SMQADELKTT WQKIDVVHEM RSLMAKYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.