Factsheet for VIT_00s0868g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0451700-00	Rice	nucleus	10.53	25.56
KRH21647	Soybean	nucleus	25.86	25.22
PGSC0003DMT400079215	Potato	nucleus	21.51	23.56
KRH10688	Soybean	nucleus	21.97	21.97
KRH57853	Soybean	nucleus	18.76	21.19
GSMUA_AchrUn_...	Banana	nucleus	18.99	20.15
VIT_12s0059g02690.t01	Wine grape	nucleus	18.99	19.04
VIT_14s0030g01600.t01	Wine grape	cytosol, mitochondrion	2.52	17.74
KXG25358	Sorghum	nucleus, plastid	15.79	15.86
TraesCS5D01G241400.1	Wheat	nucleus	17.62	15.71
Zm00001d020688_P001	Maize	nucleus	15.33	15.65
TraesCS5B01G233000.1	Wheat	nucleus	17.16	15.34
EER96833	Sorghum	nucleus	15.1	14.93
HORVU5Hr1G067630.1	Barley	nucleus	16.7	14.9
TraesCS5A01G234500.1	Wheat	nucleus	16.7	14.9
Zm00001d049991_P001	Maize	nucleus, plastid	15.1	14.47
Zm00001d005865_P001	Maize	nucleus	13.73	13.7
VIT_00s0999g00010.t01	Wine grape	cytosol, nucleus	18.31	13.24
Os08t0467600-00	Rice	nucleus	16.02	13.16

Protein Annotations

EntrezGene:100854363	wikigene:100854363	MapMan:15.5.28	ProteinID:CBI33256	ProteinID:CBI33256.3	ncoils:Coil
UniProt:D7TRY0	EMBL:FN596062	InterPro:GEBP	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EntrezGene:LOC100854363	wikigene:LOC100854363	PFAM:PF04504
PANTHER:PTHR31662	PANTHER:PTHR31662:SF1	UniParc:UPI0001BE3E64	ArrayExpress:VIT_00s0868g00010	EnsemblPlantsGene:VIT_00s0868g00010	EnsemblPlants:VIT_00s0868g00010.t01
unigene:Vvi.8759	RefSeq:XP_003635491	RefSeq:XP_003635491.1	RefSeq:XP_003635492	RefSeq:XP_003635492.1	SEG:seg

Description

No Description!

Coordinates

chrUn:+:36314235..36315880

Molecular Weight (calculated)

48788.3 Da

IEP (calculated)

4.707

GRAVY (calculated)

-1.265

Length

437 amino acids

Sequence
(BLAST)

001: MAPKRPPPAE DPPAPSSTSE EEEENEENEE NEEEEEEEEE SSPEESSEEE EEGEENKSTV LTPPPAVDKK ASSNKLVATT PAKSTPQSSS EDEEDGSESE
101: SESDSPPKSR RSSRGADPTI KPIATKPMEE TPKSKKARSK PGVSVTPSPV KSSPVKPSNS KRPGEIGLER KESKRAKKKE PEAEAEEEED GKKTGDDSKK
201: QMFQRIWSEE DELGILKGMI DYSAKNGSVP YPNGDMNEFY DFVKNTLHGD FSRVQLTDKA RRLKKKYSNN VSRAKLGEDP TFQKPHEQRA FELSKKIWGG
301: EGNSVGVQQS NKANGKARKN QKPNKAVKVE DVEVLSVING DDKEAVKLEN EPKSEPPKKY SLVVSDFTRI NESVGMSSSM DRAIEIGLGL LSEPLKAELK
401: EKWKELEDEE FQLYMKKLDL IQMEARVSMQ AYRAKHQ

Best Arabidopsis Sequence Match ( AT4G00390.1 )
(BLAST)

001: MTKKLDPPTA PSSDEDDVET SEDDSSSSEE DEPIKSLPAT TAAAPAKSTA VSAATPAKST SVSAAAPSKS TAVSAAADSD SGSESETDSD SESTDPPKSG
101: SGKTIASKKK DDPSSSTATL ALPAVKSGAK RAASEAATTS TKRVKKDEES VKKPALFQRL WSDDDEISML QGMIDYHADT GKSPSADTNA FYEFQKKSIS
201: FEVSKSQFSD KVRSLRKKYR AKEGKDEPRF VKAHDKKAFE LSKFIWGPKG IALDSNAKSN GVSKKSASKT KEKLDSVKQD LAFVGVSSTN GDDWFEKSSL
301: ARMIAGSGID EYYVRQKWSS FTLETKKIVE EKFQLMQAKE LEAMLDKSVR LTDLTSYFVD ASKN

Arabidopsis Description

Probable transcription factor At4g00390 [Source:UniProtKB/Swiss-Prot;Acc:O23063]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.