Factsheet for Bra013873.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89436	Canola	nucleus	91.34	92.9
Bra019183.1-P	Field mustard	nucleus	65.92	64.48
AT4G25210.1	Thale cress	nucleus	45.81	44.57
AT4G00130.1	Thale cress	mitochondrion	19.55	36.08
Bra031402.1-P	Field mustard	nucleus	25.14	27.11
Bra021317.1-P	Field mustard	nucleus	22.91	26.62
Bra025445.1-P	Field mustard	nucleus	21.23	24.76
Bra034488.1-P	Field mustard	nucleus	22.07	24.53
Bra032717.1-P	Field mustard	nucleus	22.35	24.1
Bra027078.1-P	Field mustard	nucleus	25.42	23.95
Bra019847.1-P	Field mustard	nucleus	22.91	23.03
KRH57853	Soybean	nucleus	22.91	21.19
PGSC0003DMT400079215	Potato	nucleus	22.91	20.55
KRH10688	Soybean	nucleus	24.86	20.37
KRH21647	Soybean	nucleus	24.58	19.64
GSMUA_AchrUn_...	Banana	nucleus	21.23	18.45
Bra009986.1-P	Field mustard	nucleus	19.55	16.91
Bra040416.1-P	Field mustard	nucleus	19.55	16.47
Bra036116.1-P	Field mustard	nucleus	15.08	15.08
Os09t0451700-00	Rice	nucleus	7.54	15.0
Bra040116.1-P	Field mustard	nucleus	14.8	14.29
KXG25358	Sorghum	nucleus, plastid	17.04	14.02
Bra038583.1-P	Field mustard	nucleus	16.2	13.84
Zm00001d020688_P001	Maize	nucleus	15.08	12.62
Zm00001d005865_P001	Maize	nucleus	15.36	12.56
EER96833	Sorghum	nucleus	15.36	12.44
Zm00001d049991_P001	Maize	nucleus, plastid	15.36	12.06
TraesCS5B01G233000.1	Wheat	nucleus	15.36	11.25
TraesCS5D01G241400.1	Wheat	nucleus	15.08	11.02
TraesCS5A01G234500.1	Wheat	nucleus	14.53	10.61
HORVU5Hr1G067630.1	Barley	nucleus	13.69	10.0
Os08t0467600-00	Rice	nucleus	14.53	9.77
VIT_00s0999g00010.t01	Wine grape	cytosol, nucleus	5.59	3.31

Protein Annotations

EnsemblPlants:Bra013873.1	EnsemblPlants:Bra013873.1-P	EnsemblPlantsGene:Bra013873	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GEBP	ncoils:Coil	PANTHER:PTHR31662
PANTHER:PTHR31662:SF1	PFAM:PF04504	SEG:seg	UniParc:UPI000254683D	UniProt:M4DBL3	MapMan:15.5.28

Description

AT4G25210 (E=3e-071) | transcription regulator

Coordinates

chrA01:+:8175027..8176103

Molecular Weight (calculated)

39313.3 Da

IEP (calculated)

7.917

GRAVY (calculated)

-0.785

Length

358 amino acids

Sequence
(BLAST)

001: MAPKDKIENP PAAASSSEEE EEEESGSSVE ASGSSSDDEA GHVQSKLTQK SPKKKPDSDS EEDESDSDSA PPTKTKPLNA VVTSGSVPAS SSTAKRSLMK
101: ADEEEPKKKV KTSATELPKK KDEEVVKKIS GEDAKKMFQR LFSETDEIAM LQGFLDFTST RGDPYENMDA FCDYVKTLID FNASKAQIVT KLQRCKKKFV
201: NIVKNALKKG RTEDKVTCSK DLDQKAFELS RKIWGVNGVL PAKPRKKSND VVKSPPSPSH TPKKEVEKRK GSVVVDAQLS SSREVALFFK AANVSVFGLD
301: ESTVSAVWDM VEDGAKKREV EEKLKKLKDM QVELCLQRTA LLDTTAKMIF KDNASSST

Best Arabidopsis Sequence Match ( AT4G25210.1 )
(BLAST)

001: MAPKKAEEVV ESPPVSSEEE ESGSSGEESE SSAEVPKKVE SSQKPESDSE GESESESSSG PEPESEPAKT IKLKPVGTKP IPETSGSAAT VPESSTAKRP
101: LKEAAPEAIK KQKTSDTEHV KKPITNDEVK KISSEDAKKM FQRLFSETDE IALLQGIIDF TSTKGDPYED IDAFCIYVKK LIDFDATKNQ IVTKLQRLKK
201: KFNNAVKNSL KKGKTEDDIE FAKDLEQKGF ELSRKIWGSN GVLVTGKSSR KKVGGTPAPK EMKLVAHSTP KKQQEEAKKP ERTEAKVVNT GLSIGKEIAS
301: FLNADNGSSC GLDESTLTAV WAKVADGAEK REVEEKWKKL KAKQFELCLQ RSGLVNETAK MIFKAYES

Arabidopsis Description

GEBPLGLABROUS1 enhancer-binding protein-like [Source:UniProtKB/Swiss-Prot;Acc:Q9SB42]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.