Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90154 | Canola | nucleus | 98.28 | 98.09 |
| Bra032908.1-P | Field mustard | nucleus | 82.1 | 77.56 |
| AT1G28420.1 | Thale cress | nucleus | 79.68 | 73.37 |
| KRH21359 | Soybean | nucleus | 48.66 | 43.53 |
| KRH20389 | Soybean | nucleus | 48.41 | 42.32 |
| KRH50116 | Soybean | nucleus | 48.03 | 42.31 |
| Solyc02g077660.2.1 | Tomato | nucleus | 44.14 | 41.3 |
| Os05t0562400-01 | Rice | nucleus | 36.11 | 40.59 |
| Zm00001d043915_P002 | Maize | nucleus | 32.8 | 40.52 |
| Bra033725.1-P | Field mustard | nucleus | 40.0 | 38.29 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 27.13 | 38.0 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 42.8 | 37.9 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 42.61 | 36.52 |
| KXG33081 | Sorghum | nucleus | 42.74 | 36.43 |
| KXG33083 | Sorghum | nucleus | 42.1 | 36.26 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 43.95 | 36.14 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 42.42 | 36.12 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 42.61 | 36.06 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 42.55 | 36.03 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 42.42 | 36.0 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 42.04 | 35.54 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 42.42 | 35.48 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 41.85 | 35.48 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 41.78 | 35.21 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 41.66 | 35.18 |
| Zm00001d011560_P012 | Maize | nucleus | 41.08 | 34.66 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 43.31 | 30.3 |
| Zm00001d043914_P001 | Maize | nucleus | 8.92 | 24.87 |
| OQU75646 | Sorghum | cytosol | 8.85 | 24.09 |
| Bra014277.1-P | Field mustard | nucleus | 15.03 | 23.14 |
| Bra034196.1-P | Field mustard | nucleus | 6.37 | 20.96 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | EnsemblPlantsGene:Bra010869 | EnsemblPlants:Bra010869.1 | EnsemblPlants:Bra010869.1-P | ncoils:Coil |
| InterPro:DDT_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR018501 | UniProt:M4D316 | PFAM:PF00046 | PFAM:PF02791 |
| PFAM:PF05066 | PFAM:PF15612 | PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 |
| PANTHER:PTHR36968:SF6 | SMART:SM00389 | SMART:SM00571 | SUPFAM:SSF46689 | UniParc:UPI00025456A6 | InterPro:WHIM1_dom |
| InterPro:WHIM2_dom | SEG:seg | : | : | : | : |
Description
AT1G28420 (E=1e-195) HB-1 | HB-1 (homeobox-1); transcription factor
Coordinates
chrA08:-:16857928..16864120
Molecular Weight (calculated)
176858.0 Da
IEP (calculated)
5.026
GRAVY (calculated)
-0.795
Length
1570 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSDEEDQIK NVNVGDVNKN KKKKIDTFNN KDSLSSKSKR QMKTPFQLQT LEEVYAEETY PSEATRAELS EKLDLSDRQL QMWFCHRRLK DKKDGQAKKP
0101: VQPAATPALS SVNELPAADD RSGSGSGSGC SPYSESRRNF ESGSGSSGAD LGEYEKGGYE PPRLSVMVRR AVVCVEAQLG EPLREDGPVL GMEFDQLPPG
0201: AFGTPIAMQT HQGHLYESKM YEPHDVRPPR SAARSFHEQQ SLDDPSSYTP EINGRYSESH ARGMDYETSR SKSSSFMHGN GPVPRPYGTH GNASLNGSTS
0301: QQDMSSPIVP SAHGDSFLLE RKVNDGRVGR GSGQKDPEKL EIQRKKYQER MRKEMERHER ERRKEEERLM RERIKEEEKL QREQRREMER REKFLQRENE
0401: RAEKQKQKDE IRRERDAIRR KIAIEKATAR RIARESMDLI EDEQLELMDL AAASKGLPSV LQLDHDTLQN LELYRDSLSA FPPKALQLKM PFTISPWKDS
0501: EENVGNLLMV WRFLISFSDV LDLWPFTLDE FIQAFHDYDS RLLGEIHITL LRSIIRDIED VARTPYSGIG NNQYTTANPE GGHPQIVEGA YAWGFDIRSW
0601: KNHLNPLTWP EILRQLALSS GFGPKLKNKS SHVTQTAHKD EAKGCEDNIS TIRSGSAAES AFASMLEKGL LAPRKSRHRL TPGTVKFAAL HVLSLEGSKG
0701: LTLIELADKI QKSGLRDLST SKTPEASISV ALTRDVKLFE RIAPCTYCVR APYVKDPADG DAILAEARKK IKAFENGLTG PEDLNDLERD EDFECDVDED
0801: PEVDDLATPA RASNGLSGKG EDAMFSDVKS IVPQYHSKDS AVSSVDDNND VVEDSNQGQS WIQGLTEGDY CHLSVEERLE ALVALVGIVN EGNSLRASLE
0901: DRMEAANSLK KQMWAEAQLD NSCMRDVLKL GRDPSQRMDE SKPMEAVSND LHKSERGFIN QEATQENCSS KRSRSQLKSY IGDKAEEVYP YRSLPLGQDR
1001: HRNRYWHFAA SASKTDPCSG LIFVELHDGK WRLIDSEEAF DFLVASLDMR GIRESHLRIM LLKIEGSFKE NAYKAKSVVN HSPADSVSPS SAIFGSNSDS
1101: MEASTSIRVE LGRNDREKES LSKRFHDFQR WMWTETYSSL PSCARKHGKK RCELLATCEV CVASYLSEYT HCTSCHRRLS MFDSSERKIL DSALTASPLP
1201: FGARLLKALL VFLEACVPDE ALESFWTEDK RKDWGFRLNA SSSPEELLQV LISLESAIKK ESLSSSFVSA KELSGVADDS GSVDVFPWIP KTISAVALRL
1301: LDLDASIIYV KPEKPELISE DDKEQISIFP GKSLTKGKGA KEQEDQDEVI VSNSGKKSKK RRVRFGRVSN RNVKRKKVQE SPDRFVAGRS DVSVDRNLGS
1401: VALNHHQVPG RGKRTVRKRP ERNDEDNYRL VSRMADIVRP NSEDVEEEEE DEQTFRDINE DWASETPREM EVMTPMQVDD ESDNSVGVES EDDDEGQFVV
1501: YDQRNKWGLD WNSNPNEAME DDEEVVGVEQ VEREDVAEMS ESSEDDDAPA NNAAANNYES GSEDYSSSDS
0101: VQPAATPALS SVNELPAADD RSGSGSGSGC SPYSESRRNF ESGSGSSGAD LGEYEKGGYE PPRLSVMVRR AVVCVEAQLG EPLREDGPVL GMEFDQLPPG
0201: AFGTPIAMQT HQGHLYESKM YEPHDVRPPR SAARSFHEQQ SLDDPSSYTP EINGRYSESH ARGMDYETSR SKSSSFMHGN GPVPRPYGTH GNASLNGSTS
0301: QQDMSSPIVP SAHGDSFLLE RKVNDGRVGR GSGQKDPEKL EIQRKKYQER MRKEMERHER ERRKEEERLM RERIKEEEKL QREQRREMER REKFLQRENE
0401: RAEKQKQKDE IRRERDAIRR KIAIEKATAR RIARESMDLI EDEQLELMDL AAASKGLPSV LQLDHDTLQN LELYRDSLSA FPPKALQLKM PFTISPWKDS
0501: EENVGNLLMV WRFLISFSDV LDLWPFTLDE FIQAFHDYDS RLLGEIHITL LRSIIRDIED VARTPYSGIG NNQYTTANPE GGHPQIVEGA YAWGFDIRSW
0601: KNHLNPLTWP EILRQLALSS GFGPKLKNKS SHVTQTAHKD EAKGCEDNIS TIRSGSAAES AFASMLEKGL LAPRKSRHRL TPGTVKFAAL HVLSLEGSKG
0701: LTLIELADKI QKSGLRDLST SKTPEASISV ALTRDVKLFE RIAPCTYCVR APYVKDPADG DAILAEARKK IKAFENGLTG PEDLNDLERD EDFECDVDED
0801: PEVDDLATPA RASNGLSGKG EDAMFSDVKS IVPQYHSKDS AVSSVDDNND VVEDSNQGQS WIQGLTEGDY CHLSVEERLE ALVALVGIVN EGNSLRASLE
0901: DRMEAANSLK KQMWAEAQLD NSCMRDVLKL GRDPSQRMDE SKPMEAVSND LHKSERGFIN QEATQENCSS KRSRSQLKSY IGDKAEEVYP YRSLPLGQDR
1001: HRNRYWHFAA SASKTDPCSG LIFVELHDGK WRLIDSEEAF DFLVASLDMR GIRESHLRIM LLKIEGSFKE NAYKAKSVVN HSPADSVSPS SAIFGSNSDS
1101: MEASTSIRVE LGRNDREKES LSKRFHDFQR WMWTETYSSL PSCARKHGKK RCELLATCEV CVASYLSEYT HCTSCHRRLS MFDSSERKIL DSALTASPLP
1201: FGARLLKALL VFLEACVPDE ALESFWTEDK RKDWGFRLNA SSSPEELLQV LISLESAIKK ESLSSSFVSA KELSGVADDS GSVDVFPWIP KTISAVALRL
1301: LDLDASIIYV KPEKPELISE DDKEQISIFP GKSLTKGKGA KEQEDQDEVI VSNSGKKSKK RRVRFGRVSN RNVKRKKVQE SPDRFVAGRS DVSVDRNLGS
1401: VALNHHQVPG RGKRTVRKRP ERNDEDNYRL VSRMADIVRP NSEDVEEEEE DEQTFRDINE DWASETPREM EVMTPMQVDD ESDNSVGVES EDDDEGQFVV
1501: YDQRNKWGLD WNSNPNEAME DDEEVVGVEQ VEREDVAEMS ESSEDDDAPA NNAAANNYES GSEDYSSSDS
0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
Arabidopsis Description
RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.