Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33081 | Sorghum | nucleus | 90.4 | 62.38 |
| KXG33083 | Sorghum | nucleus | 88.43 | 61.66 |
| Zm00001d011560_P012 | Maize | nucleus | 88.51 | 60.45 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 77.03 | 52.8 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 77.03 | 52.78 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 76.16 | 52.49 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 76.24 | 52.38 |
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 28.09 | 50.0 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 63.26 | 43.89 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 59.87 | 40.54 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 55.0 | 39.42 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 58.62 | 39.03 |
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 45.32 | 37.8 |
| Solyc07g053610.2.1 | Tomato | nucleus | 49.72 | 35.47 |
| CDY22305 | Canola | nucleus | 45.0 | 34.9 |
| Bra033725.1-P | Field mustard | nucleus | 44.85 | 34.76 |
| CDX94760 | Canola | nucleus | 45.32 | 34.57 |
| AT5G44180.1 | Thale cress | nucleus | 46.03 | 34.53 |
| KRH55891 | Soybean | nucleus | 47.91 | 34.19 |
| KRH21359 | Soybean | nucleus | 47.13 | 34.13 |
| CDY35748 | Canola | nucleus | 40.05 | 32.88 |
| KRH20389 | Soybean | nucleus | 46.42 | 32.85 |
| Bra010869.1-P | Field mustard | nucleus | 40.52 | 32.8 |
| KRH50116 | Soybean | nucleus | 45.95 | 32.77 |
| CDX90154 | Canola | nucleus | 40.36 | 32.61 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 56.96 | 32.26 |
| AT1G28420.1 | Thale cress | nucleus | 42.96 | 32.02 |
| Solyc02g077660.2.1 | Tomato | nucleus | 42.09 | 31.88 |
| Bra032908.1-P | Field mustard | nucleus | 41.38 | 31.65 |
| CDY34099 | Canola | nucleus | 41.31 | 31.53 |
| CDY65661 | Canola | nucleus | 41.31 | 31.4 |
| Zm00001d025550_P001 | Maize | nucleus | 9.83 | 30.86 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 21.72 | 24.62 |
| Zm00001d034515_P002 | Maize | nucleus | 15.81 | 17.06 |
| Zm00001d043914_P001 | Maize | nucleus | 0.47 | 1.07 |
| OQU75646 | Sorghum | cytosol | 0.47 | 1.04 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | UniProt:A0A1D6NG83 | ncoils:Coil | InterPro:DDT_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR018501 | ProteinID:ONM39448.1 | PFAM:PF00046 | PFAM:PF02791 | PFAM:PF05066 | PFAM:PF15612 |
| PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 | SMART:SM00389 | SMART:SM00571 |
| SUPFAM:SSF46689 | UniParc:UPI00084593B4 | InterPro:WHIM1_dom | InterPro:WHIM2_dom | EnsemblPlantsGene:Zm00001d043915 | EnsemblPlants:Zm00001d043915_P002 |
| EnsemblPlants:Zm00001d043915_T002 | SEG:seg | : | : | : | : |
Description
Homeobox-transcription factor 99Homeobox-DDT domain protein RLT1
Coordinates
chr3:-:213742292..213756288
Molecular Weight (calculated)
142446.0 Da
IEP (calculated)
5.322
GRAVY (calculated)
-0.699
Length
1271 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDAGGDEDGA GKAALESTAE AATLPPASTV AVPSPVPASA PGAATGTSGS GEKPVKRMMK TPYQLEVLEK TYAVEQYPSE AMRLELSAKI GLSDRQLQMW
0101: FCHRRLKDRK PPSKRQRREE ESALVPVMPP PPVLPAPVMP LASSDLVVGA PGPYDEPLHP LHSRRGAGRG RSSAVPRISM PDIGRRYYEP PPIMIAPPIP
0201: SMQLTQYELR VINSVESQLG EPLREDGPAL GVNFDPLPPG AFGAPIVPEQ QKQPVRSYDA EIFSWHDQKL LKASAFLPNM ESPFVPNSFT GKRKSPVGNS
0301: AIVQPHVGSR AVHEYQFLPE QPSDTYERAT RSHYYDTPVE VSNARIPSIT SGSQLLHGSE EAAPSYAFQG HTSGSSLLPP SSRPQVFPAA PTDYEMTQSN
0401: SNLSSVPVEG QFDISQVAAF ENPPVSSEII AYHDEDTSRV ERKRKHSEEA KIAKEVEAHE RRIRKELEKQ DMLNKKREEQ RRKEMERLDR ERRKEEERLL
0501: RERQREEERF QREQRREHER MEKFLQKQSR RAEKQRQKEE LRKEKEAARQ KAANERATAR RIAREYMELV EDERLESMEL AAQNKGLPSM LYLDSDTLQQ
0601: LDSFRGMLSQ FPPTTVRMKL PFSIKPWTGS EDNVGNLLMV WKFLITFTDV LGLCPVTLDE FVQSLHDYDS RLLGELHIAL LRSIIKDIED VARTPSIALG
0701: VNPGGGHPQI VEGAYAWGFN IRSWQRHLNL LTWPEILRQF ALSAGFGPQL KKRTVEDSYY RNDNEGHDGE NVILTIRNGT AAVNAAAKMK ERGYTNRRRS
0801: RHRLTPGTVK FAAFHVLSLE GSNGLTILEV AEKIQKSGLR DLTTSKTPEA SIAAALSRDT KLFERTAPST YCVKSPYRKD PADSEAVLSA ARERIRAFQN
0901: VLSDSEAEKE VDEAERDDDS DCDDGDDDPD GDDVNTEVED DKDPLLAVKS QDEVPSTTTV IGIKANLDGV GNALNSSSSF TKSAKGAPLP SLGRSNAADT
1001: SNDLPLGVSS ANHEVVPDDS ENTQIDESNQ AEPWVRALAE GDYCDLSVEE RLNALVALVG VATEGNSIRA VLEERLELAN ALKKQMWAEA QLDKRRFKEE
1101: FTSRVQYNSD MGLKPDIYQE NNVTEITSTP ACDAYRENDE HVGTINNCEM LDQHNQGNAG SLPYERNGVC QEILATPDTS YVQQYAYADK RRSQLKSYIG
1201: HRAEQLYVYR SLPLGQDRRR NRYWQFTTSA SPNDPGSGRI FFESKDGYWR VIDSEEVSVY YILLDSFLLL Y
0101: FCHRRLKDRK PPSKRQRREE ESALVPVMPP PPVLPAPVMP LASSDLVVGA PGPYDEPLHP LHSRRGAGRG RSSAVPRISM PDIGRRYYEP PPIMIAPPIP
0201: SMQLTQYELR VINSVESQLG EPLREDGPAL GVNFDPLPPG AFGAPIVPEQ QKQPVRSYDA EIFSWHDQKL LKASAFLPNM ESPFVPNSFT GKRKSPVGNS
0301: AIVQPHVGSR AVHEYQFLPE QPSDTYERAT RSHYYDTPVE VSNARIPSIT SGSQLLHGSE EAAPSYAFQG HTSGSSLLPP SSRPQVFPAA PTDYEMTQSN
0401: SNLSSVPVEG QFDISQVAAF ENPPVSSEII AYHDEDTSRV ERKRKHSEEA KIAKEVEAHE RRIRKELEKQ DMLNKKREEQ RRKEMERLDR ERRKEEERLL
0501: RERQREEERF QREQRREHER MEKFLQKQSR RAEKQRQKEE LRKEKEAARQ KAANERATAR RIAREYMELV EDERLESMEL AAQNKGLPSM LYLDSDTLQQ
0601: LDSFRGMLSQ FPPTTVRMKL PFSIKPWTGS EDNVGNLLMV WKFLITFTDV LGLCPVTLDE FVQSLHDYDS RLLGELHIAL LRSIIKDIED VARTPSIALG
0701: VNPGGGHPQI VEGAYAWGFN IRSWQRHLNL LTWPEILRQF ALSAGFGPQL KKRTVEDSYY RNDNEGHDGE NVILTIRNGT AAVNAAAKMK ERGYTNRRRS
0801: RHRLTPGTVK FAAFHVLSLE GSNGLTILEV AEKIQKSGLR DLTTSKTPEA SIAAALSRDT KLFERTAPST YCVKSPYRKD PADSEAVLSA ARERIRAFQN
0901: VLSDSEAEKE VDEAERDDDS DCDDGDDDPD GDDVNTEVED DKDPLLAVKS QDEVPSTTTV IGIKANLDGV GNALNSSSSF TKSAKGAPLP SLGRSNAADT
1001: SNDLPLGVSS ANHEVVPDDS ENTQIDESNQ AEPWVRALAE GDYCDLSVEE RLNALVALVG VATEGNSIRA VLEERLELAN ALKKQMWAEA QLDKRRFKEE
1101: FTSRVQYNSD MGLKPDIYQE NNVTEITSTP ACDAYRENDE HVGTINNCEM LDQHNQGNAG SLPYERNGVC QEILATPDTS YVQQYAYADK RRSQLKSYIG
1201: HRAEQLYVYR SLPLGQDRRR NRYWQFTTSA SPNDPGSGRI FFESKDGYWR VIDSEEVSVY YILLDSFLLL Y
0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
Arabidopsis Description
RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.